Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05345

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS05335 and PFLU_RS05340 are separated by 136 nucleotidesPFLU_RS05340 and PFLU_RS05345 are separated by 13 nucleotidesPFLU_RS05345 and PFLU_RS05350 are separated by 125 nucleotides PFLU_RS05335: PFLU_RS05335 - SDR family oxidoreductase, at 1,189,356 to 1,190,117 _RS05335 PFLU_RS05340: PFLU_RS05340 - SDR family NAD(P)-dependent oxidoreductase, at 1,190,254 to 1,191,003 _RS05340 PFLU_RS05345: PFLU_RS05345 - hypothetical protein, at 1,191,017 to 1,191,310 _RS05345 PFLU_RS05350: PFLU_RS05350 - GTP-binding protein, at 1,191,436 to 1,192,410 _RS05350 Position (kb) 1191 1192Strain fitness (log2 ratio) -3 -2 -1 0 1at 1190.058 kb on + strandat 1190.058 kb on + strandat 1190.059 kb on - strandat 1190.059 kb on - strandat 1190.059 kb on - strandat 1190.120 kb on + strandat 1190.121 kb on - strandat 1190.121 kb on - strandat 1190.176 kb on + strandat 1190.176 kb on + strandat 1190.177 kb on - strandat 1190.177 kb on - strandat 1190.182 kb on + strandat 1190.182 kb on + strandat 1190.183 kb on - strandat 1190.183 kb on - strandat 1190.241 kb on - strandat 1190.253 kb on + strandat 1190.253 kb on + strandat 1190.253 kb on + strandat 1190.253 kb on + strandat 1190.253 kb on + strandat 1190.253 kb on + strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.254 kb on - strandat 1190.269 kb on - strandat 1190.330 kb on - strand, within PFLU_RS05340at 1190.716 kb on + strand, within PFLU_RS05340at 1190.716 kb on + strand, within PFLU_RS05340at 1190.748 kb on + strand, within PFLU_RS05340at 1190.749 kb on - strand, within PFLU_RS05340at 1191.013 kb on - strandat 1191.013 kb on - strandat 1191.176 kb on + strand, within PFLU_RS05345at 1191.176 kb on + strand, within PFLU_RS05345at 1191.451 kb on - strandat 1191.451 kb on - strandat 1191.605 kb on + strand, within PFLU_RS05350at 1191.605 kb on + strand, within PFLU_RS05350at 1191.605 kb on + strand, within PFLU_RS05350at 1191.605 kb on + strand, within PFLU_RS05350at 1191.605 kb on + strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.606 kb on - strand, within PFLU_RS05350at 1191.899 kb on + strand, within PFLU_RS05350at 1192.096 kb on - strand, within PFLU_RS05350at 1192.181 kb on + strand, within PFLU_RS05350at 1192.182 kb on - strand, within PFLU_RS05350at 1192.182 kb on - strand, within PFLU_RS05350at 1192.182 kb on - strand, within PFLU_RS05350at 1192.182 kb on - strand, within PFLU_RS05350at 1192.182 kb on - strand, within PFLU_RS05350at 1192.182 kb on - strand, within PFLU_RS05350

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,190,058 + -1.1
1,190,058 + -0.2
1,190,059 - +0.0
1,190,059 - -2.5
1,190,059 - -0.5
1,190,120 + -2.6
1,190,121 - +0.9
1,190,121 - +0.4
1,190,176 + -0.1
1,190,176 + -0.7
1,190,177 - -2.0
1,190,177 - +1.0
1,190,182 + +0.6
1,190,182 + +0.7
1,190,183 - -1.3
1,190,183 - +1.0
1,190,241 - -1.2
1,190,253 + +0.3
1,190,253 + -0.4
1,190,253 + +1.1
1,190,253 + +1.3
1,190,253 + -0.6
1,190,253 + +0.8
1,190,254 - -0.0
1,190,254 - +0.2
1,190,254 - +1.0
1,190,254 - +1.2
1,190,254 - +1.7
1,190,254 - +0.8
1,190,254 - +1.3
1,190,254 - -0.5
1,190,254 - -0.5
1,190,269 - +0.7
1,190,330 - PFLU_RS05340 0.10 -2.8
1,190,716 + PFLU_RS05340 0.62 +0.1
1,190,716 + PFLU_RS05340 0.62 -0.4
1,190,748 + PFLU_RS05340 0.66 -0.4
1,190,749 - PFLU_RS05340 0.66 +0.1
1,191,013 - +0.2
1,191,013 - +0.3
1,191,176 + PFLU_RS05345 0.54 -0.4
1,191,176 + PFLU_RS05345 0.54 -0.2
1,191,451 - -2.7
1,191,451 - +0.2
1,191,605 + PFLU_RS05350 0.17 -1.1
1,191,605 + PFLU_RS05350 0.17 +0.3
1,191,605 + PFLU_RS05350 0.17 -0.4
1,191,605 + PFLU_RS05350 0.17 +0.3
1,191,605 + PFLU_RS05350 0.17 -1.7
1,191,606 - PFLU_RS05350 0.17 -1.3
1,191,606 - PFLU_RS05350 0.17 +0.0
1,191,606 - PFLU_RS05350 0.17 -1.6
1,191,606 - PFLU_RS05350 0.17 -0.5
1,191,606 - PFLU_RS05350 0.17 -0.7
1,191,606 - PFLU_RS05350 0.17 -0.4
1,191,606 - PFLU_RS05350 0.17 -0.9
1,191,606 - PFLU_RS05350 0.17 +1.7
1,191,899 + PFLU_RS05350 0.47 +0.0
1,192,096 - PFLU_RS05350 0.68 -2.0
1,192,181 + PFLU_RS05350 0.76 -0.8
1,192,182 - PFLU_RS05350 0.77 +0.3
1,192,182 - PFLU_RS05350 0.77 -0.5
1,192,182 - PFLU_RS05350 0.77 -0.9
1,192,182 - PFLU_RS05350 0.77 +0.4
1,192,182 - PFLU_RS05350 0.77 +0.2
1,192,182 - PFLU_RS05350 0.77 +0.6

Or see this region's nucleotide sequence