Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01815

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01810 and PFLU_RS01815 are separated by 15 nucleotidesPFLU_RS01815 and PFLU_RS01820 are separated by 12 nucleotides PFLU_RS01810: PFLU_RS01810 - amino acid permease, at 407,244 to 408,653 _RS01810 PFLU_RS01815: PFLU_RS01815 - imidazolonepropionase, at 408,669 to 409,874 _RS01815 PFLU_RS01820: PFLU_RS01820 - N-formylglutamate deformylase, at 409,887 to 410,687 _RS01820 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1 2 3at 407.876 kb on - strand, within PFLU_RS01810at 407.978 kb on + strand, within PFLU_RS01810at 407.991 kb on + strand, within PFLU_RS01810at 407.991 kb on + strand, within PFLU_RS01810at 407.991 kb on + strand, within PFLU_RS01810at 407.991 kb on + strand, within PFLU_RS01810at 407.991 kb on + strand, within PFLU_RS01810at 407.991 kb on + strand, within PFLU_RS01810at 407.991 kb on + strand, within PFLU_RS01810at 407.992 kb on - strand, within PFLU_RS01810at 407.992 kb on - strand, within PFLU_RS01810at 407.992 kb on - strand, within PFLU_RS01810at 407.992 kb on - strand, within PFLU_RS01810at 407.995 kb on + strand, within PFLU_RS01810at 407.995 kb on + strand, within PFLU_RS01810at 407.995 kb on + strand, within PFLU_RS01810at 407.995 kb on + strand, within PFLU_RS01810at 407.996 kb on - strand, within PFLU_RS01810at 407.996 kb on - strand, within PFLU_RS01810at 407.996 kb on - strand, within PFLU_RS01810at 408.024 kb on + strand, within PFLU_RS01810at 408.024 kb on + strand, within PFLU_RS01810at 408.024 kb on + strand, within PFLU_RS01810at 408.025 kb on - strand, within PFLU_RS01810at 408.025 kb on - strand, within PFLU_RS01810at 408.025 kb on - strand, within PFLU_RS01810at 408.025 kb on - strand, within PFLU_RS01810at 408.180 kb on + strand, within PFLU_RS01810at 408.180 kb on + strand, within PFLU_RS01810at 408.180 kb on + strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.181 kb on - strand, within PFLU_RS01810at 408.300 kb on + strand, within PFLU_RS01810at 408.300 kb on + strand, within PFLU_RS01810at 408.300 kb on + strand, within PFLU_RS01810at 408.300 kb on + strand, within PFLU_RS01810at 408.301 kb on - strand, within PFLU_RS01810at 408.301 kb on - strand, within PFLU_RS01810at 408.460 kb on - strand, within PFLU_RS01810at 408.513 kb on + strandat 408.514 kb on - strandat 408.514 kb on - strandat 408.514 kb on - strandat 408.579 kb on + strandat 408.579 kb on + strandat 408.579 kb on + strandat 408.580 kb on - strandat 408.580 kb on - strandat 408.580 kb on - strandat 408.580 kb on - strandat 408.627 kb on + strandat 408.628 kb on - strandat 408.628 kb on - strandat 408.656 kb on + strandat 408.657 kb on - strandat 408.720 kb on + strandat 408.794 kb on - strand, within PFLU_RS01815at 408.807 kb on + strand, within PFLU_RS01815at 408.808 kb on - strand, within PFLU_RS01815at 408.930 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.197 kb on + strand, within PFLU_RS01815at 409.198 kb on - strand, within PFLU_RS01815at 409.198 kb on - strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.218 kb on + strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.219 kb on - strand, within PFLU_RS01815at 409.299 kb on + strand, within PFLU_RS01815at 409.299 kb on + strand, within PFLU_RS01815at 409.524 kb on + strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.525 kb on - strand, within PFLU_RS01815at 409.700 kb on + strand, within PFLU_RS01815at 409.700 kb on + strand, within PFLU_RS01815at 409.701 kb on - strand, within PFLU_RS01815at 409.813 kb on - strandat 409.813 kb on - strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.879 kb on + strandat 409.880 kb on - strandat 409.880 kb on - strandat 409.880 kb on - strandat 410.037 kb on + strand, within PFLU_RS01820at 410.037 kb on + strand, within PFLU_RS01820at 410.037 kb on + strand, within PFLU_RS01820at 410.037 kb on + strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.038 kb on - strand, within PFLU_RS01820at 410.133 kb on + strand, within PFLU_RS01820at 410.133 kb on + strand, within PFLU_RS01820at 410.133 kb on + strand, within PFLU_RS01820at 410.232 kb on + strand, within PFLU_RS01820at 410.232 kb on + strand, within PFLU_RS01820at 410.463 kb on + strand, within PFLU_RS01820at 410.463 kb on + strand, within PFLU_RS01820at 410.464 kb on - strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.473 kb on + strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.474 kb on - strand, within PFLU_RS01820at 410.502 kb on - strand, within PFLU_RS01820at 410.514 kb on + strand, within PFLU_RS01820at 410.514 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.571 kb on + strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.572 kb on - strand, within PFLU_RS01820at 410.659 kb on + strandat 410.659 kb on + strandat 410.659 kb on + strandat 410.659 kb on + strandat 410.660 kb on - strandat 410.660 kb on - strandat 410.660 kb on - strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.706 kb on + strandat 410.707 kb on - strandat 410.707 kb on - strandat 410.707 kb on - strandat 410.707 kb on - strandat 410.711 kb on - strandat 410.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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407,876 - PFLU_RS01810 0.45 +0.6
407,978 + PFLU_RS01810 0.52 -0.3
407,991 + PFLU_RS01810 0.53 +0.2
407,991 + PFLU_RS01810 0.53 -0.1
407,991 + PFLU_RS01810 0.53 +0.8
407,991 + PFLU_RS01810 0.53 +0.6
407,991 + PFLU_RS01810 0.53 +1.0
407,991 + PFLU_RS01810 0.53 +1.0
407,991 + PFLU_RS01810 0.53 +1.0
407,992 - PFLU_RS01810 0.53 +0.0
407,992 - PFLU_RS01810 0.53 +1.9
407,992 - PFLU_RS01810 0.53 +0.6
407,992 - PFLU_RS01810 0.53 -1.2
407,995 + PFLU_RS01810 0.53 +0.5
407,995 + PFLU_RS01810 0.53 -0.3
407,995 + PFLU_RS01810 0.53 +0.8
407,995 + PFLU_RS01810 0.53 +0.2
407,996 - PFLU_RS01810 0.53 -1.2
407,996 - PFLU_RS01810 0.53 +0.2
407,996 - PFLU_RS01810 0.53 -1.1
408,024 + PFLU_RS01810 0.55 +0.2
408,024 + PFLU_RS01810 0.55 +0.1
408,024 + PFLU_RS01810 0.55 -0.3
408,025 - PFLU_RS01810 0.55 +0.6
408,025 - PFLU_RS01810 0.55 -0.2
408,025 - PFLU_RS01810 0.55 -2.0
408,025 - PFLU_RS01810 0.55 +0.1
408,180 + PFLU_RS01810 0.66 -0.1
408,180 + PFLU_RS01810 0.66 +1.0
408,180 + PFLU_RS01810 0.66 -0.0
408,181 - PFLU_RS01810 0.66 +0.0
408,181 - PFLU_RS01810 0.66 -0.5
408,181 - PFLU_RS01810 0.66 +0.7
408,181 - PFLU_RS01810 0.66 -0.4
408,181 - PFLU_RS01810 0.66 +0.4
408,181 - PFLU_RS01810 0.66 -0.8
408,181 - PFLU_RS01810 0.66 -0.0
408,181 - PFLU_RS01810 0.66 +1.2
408,300 + PFLU_RS01810 0.75 +0.3
408,300 + PFLU_RS01810 0.75 -0.1
408,300 + PFLU_RS01810 0.75 +1.0
408,300 + PFLU_RS01810 0.75 -0.0
408,301 - PFLU_RS01810 0.75 -0.3
408,301 - PFLU_RS01810 0.75 -0.5
408,460 - PFLU_RS01810 0.86 +0.3
408,513 + -0.3
408,514 - +0.7
408,514 - +0.4
408,514 - +0.5
408,579 + -0.1
408,579 + +1.2
408,579 + +0.4
408,580 - +0.4
408,580 - +0.4
408,580 - -1.9
408,580 - -2.1
408,627 + -1.2
408,628 - -0.2
408,628 - -0.4
408,656 + -0.8
408,657 - -0.2
408,720 + +0.6
408,794 - PFLU_RS01815 0.10 +0.3
408,807 + PFLU_RS01815 0.11 -1.3
408,808 - PFLU_RS01815 0.12 -0.2
408,930 + PFLU_RS01815 0.22 -2.2
409,197 + PFLU_RS01815 0.44 +0.2
409,197 + PFLU_RS01815 0.44 -1.8
409,197 + PFLU_RS01815 0.44 -1.0
409,197 + PFLU_RS01815 0.44 +0.2
409,198 - PFLU_RS01815 0.44 -0.8
409,198 - PFLU_RS01815 0.44 +2.0
409,218 + PFLU_RS01815 0.46 +0.0
409,218 + PFLU_RS01815 0.46 +0.2
409,218 + PFLU_RS01815 0.46 -1.7
409,218 + PFLU_RS01815 0.46 -0.9
409,218 + PFLU_RS01815 0.46 -0.3
409,219 - PFLU_RS01815 0.46 -1.8
409,219 - PFLU_RS01815 0.46 +0.5
409,219 - PFLU_RS01815 0.46 +0.9
409,219 - PFLU_RS01815 0.46 +0.6
409,219 - PFLU_RS01815 0.46 -1.5
409,299 + PFLU_RS01815 0.52 +0.5
409,299 + PFLU_RS01815 0.52 +1.4
409,524 + PFLU_RS01815 0.71 -1.2
409,525 - PFLU_RS01815 0.71 +2.9
409,525 - PFLU_RS01815 0.71 -0.8
409,525 - PFLU_RS01815 0.71 +0.0
409,525 - PFLU_RS01815 0.71 -0.2
409,700 + PFLU_RS01815 0.85 -0.7
409,700 + PFLU_RS01815 0.85 -0.5
409,701 - PFLU_RS01815 0.86 -0.2
409,813 - +0.8
409,813 - -0.1
409,879 + -0.0
409,879 + +1.3
409,879 + +1.0
409,879 + +0.4
409,879 + -0.5
409,880 - -0.5
409,880 - -0.3
409,880 - +0.5
410,037 + PFLU_RS01820 0.19 -1.1
410,037 + PFLU_RS01820 0.19 -0.1
410,037 + PFLU_RS01820 0.19 +0.9
410,037 + PFLU_RS01820 0.19 +1.4
410,038 - PFLU_RS01820 0.19 -0.8
410,038 - PFLU_RS01820 0.19 +0.5
410,038 - PFLU_RS01820 0.19 +0.1
410,038 - PFLU_RS01820 0.19 +0.7
410,038 - PFLU_RS01820 0.19 +0.5
410,133 + PFLU_RS01820 0.31 +0.0
410,133 + PFLU_RS01820 0.31 -0.2
410,133 + PFLU_RS01820 0.31 -0.2
410,232 + PFLU_RS01820 0.43 +0.8
410,232 + PFLU_RS01820 0.43 +0.7
410,463 + PFLU_RS01820 0.72 -0.9
410,463 + PFLU_RS01820 0.72 -1.4
410,464 - PFLU_RS01820 0.72 +1.5
410,473 + PFLU_RS01820 0.73 +0.8
410,473 + PFLU_RS01820 0.73 -0.3
410,473 + PFLU_RS01820 0.73 -0.1
410,473 + PFLU_RS01820 0.73 +1.6
410,473 + PFLU_RS01820 0.73 -0.2
410,473 + PFLU_RS01820 0.73 +0.2
410,473 + PFLU_RS01820 0.73 -0.6
410,474 - PFLU_RS01820 0.73 +0.7
410,474 - PFLU_RS01820 0.73 +0.2
410,474 - PFLU_RS01820 0.73 +0.4
410,474 - PFLU_RS01820 0.73 -0.1
410,474 - PFLU_RS01820 0.73 +0.0
410,474 - PFLU_RS01820 0.73 +0.9
410,474 - PFLU_RS01820 0.73 -0.3
410,474 - PFLU_RS01820 0.73 +0.9
410,474 - PFLU_RS01820 0.73 -0.5
410,502 - PFLU_RS01820 0.77 -0.5
410,514 + PFLU_RS01820 0.78 -1.2
410,514 + PFLU_RS01820 0.78 +0.2
410,571 + PFLU_RS01820 0.85 +1.0
410,571 + PFLU_RS01820 0.85 +0.0
410,571 + PFLU_RS01820 0.85 -0.8
410,571 + PFLU_RS01820 0.85 +0.6
410,571 + PFLU_RS01820 0.85 +0.2
410,571 + PFLU_RS01820 0.85 -0.2
410,571 + PFLU_RS01820 0.85 +0.2
410,571 + PFLU_RS01820 0.85 +1.0
410,571 + PFLU_RS01820 0.85 +0.2
410,571 + PFLU_RS01820 0.85 -0.2
410,571 + PFLU_RS01820 0.85 +0.1
410,571 + PFLU_RS01820 0.85 +0.8
410,572 - PFLU_RS01820 0.86 +1.1
410,572 - PFLU_RS01820 0.86 -0.1
410,572 - PFLU_RS01820 0.86 +0.5
410,572 - PFLU_RS01820 0.86 +0.5
410,572 - PFLU_RS01820 0.86 +0.8
410,572 - PFLU_RS01820 0.86 +0.6
410,572 - PFLU_RS01820 0.86 +0.7
410,572 - PFLU_RS01820 0.86 -2.5
410,572 - PFLU_RS01820 0.86 -0.4
410,572 - PFLU_RS01820 0.86 +0.7
410,572 - PFLU_RS01820 0.86 +0.9
410,572 - PFLU_RS01820 0.86 -0.7
410,659 + -0.2
410,659 + -0.1
410,659 + +1.0
410,659 + -0.7
410,660 - +0.1
410,660 - -0.3
410,660 - +0.3
410,706 + +0.2
410,706 + +0.2
410,706 + -1.7
410,706 + -0.2
410,706 + +0.5
410,706 + +0.5
410,706 + -0.7
410,706 + +0.2
410,706 + +0.9
410,707 - +0.0
410,707 - -1.0
410,707 - -0.0
410,707 - +2.7
410,711 - +0.6
410,830 - -0.4

Or see this region's nucleotide sequence