Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27105 and PS417_27110 overlap by 4 nucleotides PS417_27110 and PS417_27115 overlap by 4 nucleotides PS417_27115 and PS417_27120 are separated by 66 nucleotides
PS417_27105: PS417_27105 - spermidine/putrescine ABC transporter permease, at 5,851,023 to 5,851,907
_27105
PS417_27110: PS417_27110 - spermidine/putrescine ABC transporter permease, at 5,851,904 to 5,852,824
_27110
PS417_27115: PS417_27115 - putrescine ABC transporter, ATPase component <small>(from data)</small>, at 5,852,821 to 5,853,963
_27115
PS417_27120: PS417_27120 - ABC transporter substrate-binding protein, at 5,854,030 to 5,855,124
_27120
Position (kb) 5852
5853
5854 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5851.825 kb on + strand at 5851.853 kb on - strand at 5851.853 kb on - strand at 5851.856 kb on + strand at 5851.857 kb on - strand at 5851.907 kb on + strand at 5851.908 kb on - strand at 5852.280 kb on + strand, within PS417_27110 at 5852.281 kb on - strand, within PS417_27110 at 5852.281 kb on - strand, within PS417_27110 at 5852.281 kb on - strand, within PS417_27110 at 5852.295 kb on + strand, within PS417_27110 at 5852.296 kb on - strand, within PS417_27110 at 5852.296 kb on - strand, within PS417_27110 at 5852.297 kb on + strand, within PS417_27110 at 5852.403 kb on + strand, within PS417_27110 at 5852.601 kb on + strand, within PS417_27110 at 5852.833 kb on + strand at 5852.864 kb on + strand at 5852.864 kb on + strand at 5852.865 kb on - strand at 5852.865 kb on - strand at 5852.865 kb on - strand at 5852.865 kb on - strand at 5852.955 kb on - strand, within PS417_27115 at 5852.955 kb on - strand, within PS417_27115 at 5852.955 kb on - strand, within PS417_27115 at 5852.955 kb on - strand, within PS417_27115 at 5852.978 kb on + strand, within PS417_27115 at 5853.116 kb on + strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.242 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.726 kb on - strand, within PS417_27115 at 5853.939 kb on + strand at 5853.941 kb on + strand at 5853.966 kb on - strand at 5854.031 kb on + strand at 5854.032 kb on - strand at 5854.032 kb on - strand at 5854.032 kb on - strand at 5854.211 kb on + strand, within PS417_27120 at 5854.212 kb on - strand, within PS417_27120 at 5854.250 kb on + strand, within PS417_27120 at 5854.250 kb on + strand, within PS417_27120 at 5854.347 kb on - strand, within PS417_27120 at 5854.457 kb on + strand, within PS417_27120 at 5854.457 kb on + strand, within PS417_27120 at 5854.475 kb on + strand, within PS417_27120 at 5854.476 kb on - strand, within PS417_27120 at 5854.476 kb on - strand, within PS417_27120 at 5854.539 kb on + strand, within PS417_27120 at 5854.540 kb on - strand, within PS417_27120 at 5854.562 kb on + strand, within PS417_27120 at 5854.562 kb on + strand, within PS417_27120 at 5854.563 kb on - strand, within PS417_27120 at 5854.563 kb on - strand, within PS417_27120 at 5854.739 kb on + strand, within PS417_27120 at 5854.752 kb on - strand, within PS417_27120 at 5854.961 kb on + strand, within PS417_27120
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,851,825 + -0.9 5,851,853 - -2.8 5,851,853 - -2.1 5,851,856 + -1.1 5,851,857 - -2.1 5,851,907 + -0.6 5,851,908 - -1.1 5,852,280 + PS417_27110 0.41 -0.6 5,852,281 - PS417_27110 0.41 -0.6 5,852,281 - PS417_27110 0.41 +0.7 5,852,281 - PS417_27110 0.41 -1.1 5,852,295 + PS417_27110 0.42 +0.1 5,852,296 - PS417_27110 0.43 -0.4 5,852,296 - PS417_27110 0.43 +0.2 5,852,297 + PS417_27110 0.43 -0.6 5,852,403 + PS417_27110 0.54 -1.3 5,852,601 + PS417_27110 0.76 -2.5 5,852,833 + -0.4 5,852,864 + -1.0 5,852,864 + -1.0 5,852,865 - -1.8 5,852,865 - -0.9 5,852,865 - -0.9 5,852,865 - -1.2 5,852,955 - PS417_27115 0.12 -0.3 5,852,955 - PS417_27115 0.12 -1.2 5,852,955 - PS417_27115 0.12 +0.2 5,852,955 - PS417_27115 0.12 -0.4 5,852,978 + PS417_27115 0.14 -1.2 5,853,116 + PS417_27115 0.26 -1.3 5,853,117 - PS417_27115 0.26 -1.4 5,853,117 - PS417_27115 0.26 -0.6 5,853,117 - PS417_27115 0.26 -1.2 5,853,117 - PS417_27115 0.26 -1.0 5,853,242 + PS417_27115 0.37 -0.5 5,853,639 + PS417_27115 0.72 -1.9 5,853,639 + PS417_27115 0.72 -1.1 5,853,639 + PS417_27115 0.72 -1.1 5,853,639 + PS417_27115 0.72 -0.3 5,853,726 - PS417_27115 0.79 -0.8 5,853,939 + +0.8 5,853,941 + +0.0 5,853,966 - +0.8 5,854,031 + -1.1 5,854,032 - -0.2 5,854,032 - +0.7 5,854,032 - +0.3 5,854,211 + PS417_27120 0.17 +0.6 5,854,212 - PS417_27120 0.17 +0.2 5,854,250 + PS417_27120 0.20 -1.4 5,854,250 + PS417_27120 0.20 +0.1 5,854,347 - PS417_27120 0.29 -0.4 5,854,457 + PS417_27120 0.39 -1.6 5,854,457 + PS417_27120 0.39 -0.1 5,854,475 + PS417_27120 0.41 +0.2 5,854,476 - PS417_27120 0.41 +0.2 5,854,476 - PS417_27120 0.41 +1.0 5,854,539 + PS417_27120 0.46 -1.3 5,854,540 - PS417_27120 0.47 +1.1 5,854,562 + PS417_27120 0.49 -0.9 5,854,562 + PS417_27120 0.49 -1.1 5,854,563 - PS417_27120 0.49 +0.6 5,854,563 - PS417_27120 0.49 +0.5 5,854,739 + PS417_27120 0.65 -2.0 5,854,752 - PS417_27120 0.66 -0.3 5,854,961 + PS417_27120 0.85 -0.7
Or see this region's nucleotide sequence