Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25760 and PS417_25765 are separated by 214 nucleotides PS417_25765 and PS417_25770 are separated by 18 nucleotides PS417_25770 and PS417_25775 are separated by 77 nucleotides
PS417_25760: PS417_25760 - spermidine/putrescine ABC transporter ATP-binding protein, at 5,561,056 to 5,562,168
_25760
PS417_25765: PS417_25765 - transcriptional regulator, at 5,562,383 to 5,563,012
_25765
PS417_25770: PS417_25770 - ABC transporter substrate-binding protein, at 5,563,031 to 5,565,025
_25770
PS417_25775: PS417_25775 - lipoprotein, at 5,565,103 to 5,566,077
_25775
Position (kb) 5563
5564
5565
5566 Strain fitness (log2 ratio) -1
0
1 at 5562.111 kb on - strand at 5562.169 kb on - strand at 5562.169 kb on - strand at 5562.208 kb on + strand at 5562.369 kb on - strand at 5562.384 kb on + strand at 5562.385 kb on - strand at 5562.385 kb on - strand at 5562.409 kb on - strand at 5562.436 kb on + strand at 5562.642 kb on + strand, within PS417_25765 at 5562.643 kb on - strand, within PS417_25765 at 5563.033 kb on - strand at 5563.033 kb on - strand at 5563.243 kb on + strand, within PS417_25770 at 5563.244 kb on - strand at 5563.244 kb on - strand, within PS417_25770 at 5563.472 kb on + strand, within PS417_25770 at 5563.472 kb on + strand, within PS417_25770 at 5563.473 kb on - strand, within PS417_25770 at 5563.744 kb on - strand, within PS417_25770 at 5563.869 kb on - strand, within PS417_25770 at 5564.229 kb on + strand, within PS417_25770 at 5564.465 kb on + strand, within PS417_25770 at 5564.466 kb on - strand, within PS417_25770 at 5564.517 kb on + strand, within PS417_25770 at 5564.532 kb on + strand, within PS417_25770 at 5564.647 kb on + strand, within PS417_25770 at 5564.647 kb on + strand, within PS417_25770 at 5564.647 kb on + strand, within PS417_25770 at 5564.648 kb on - strand, within PS417_25770 at 5564.649 kb on + strand, within PS417_25770 at 5564.649 kb on + strand, within PS417_25770 at 5564.649 kb on + strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.873 kb on + strand at 5565.067 kb on + strand at 5565.372 kb on + strand, within PS417_25775 at 5565.377 kb on + strand, within PS417_25775 at 5565.417 kb on + strand, within PS417_25775 at 5565.418 kb on - strand, within PS417_25775 at 5565.492 kb on + strand at 5565.493 kb on - strand, within PS417_25775 at 5565.509 kb on + strand, within PS417_25775 at 5565.509 kb on + strand, within PS417_25775 at 5565.726 kb on - strand at 5565.849 kb on - strand, within PS417_25775 at 5565.849 kb on - strand, within PS417_25775 at 5565.849 kb on - strand, within PS417_25775 at 5565.895 kb on + strand, within PS417_25775 at 5565.896 kb on - strand, within PS417_25775 at 5565.971 kb on - strand, within PS417_25775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,562,111 - +0.7 5,562,169 - -0.1 5,562,169 - -1.0 5,562,208 + -0.2 5,562,369 - -0.3 5,562,384 + -0.4 5,562,385 - +0.1 5,562,385 - -0.1 5,562,409 - +0.2 5,562,436 + +0.8 5,562,642 + PS417_25765 0.41 +0.5 5,562,643 - PS417_25765 0.41 +0.4 5,563,033 - +0.3 5,563,033 - +1.0 5,563,243 + PS417_25770 0.11 +0.9 5,563,244 - -0.2 5,563,244 - PS417_25770 0.11 +0.2 5,563,472 + PS417_25770 0.22 +0.4 5,563,472 + PS417_25770 0.22 +0.3 5,563,473 - PS417_25770 0.22 +0.1 5,563,744 - PS417_25770 0.36 -0.0 5,563,869 - PS417_25770 0.42 +0.1 5,564,229 + PS417_25770 0.60 -0.2 5,564,465 + PS417_25770 0.72 +1.1 5,564,466 - PS417_25770 0.72 +0.6 5,564,517 + PS417_25770 0.74 -0.1 5,564,532 + PS417_25770 0.75 +0.1 5,564,647 + PS417_25770 0.81 -0.6 5,564,647 + PS417_25770 0.81 -0.6 5,564,647 + PS417_25770 0.81 -0.5 5,564,648 - PS417_25770 0.81 -0.5 5,564,649 + PS417_25770 0.81 +0.2 5,564,649 + PS417_25770 0.81 -0.0 5,564,649 + PS417_25770 0.81 -0.1 5,564,650 - PS417_25770 0.81 +1.4 5,564,650 - PS417_25770 0.81 +0.4 5,564,650 - PS417_25770 0.81 -0.4 5,564,650 - PS417_25770 0.81 +0.3 5,564,650 - PS417_25770 0.81 +0.8 5,564,873 + +0.8 5,565,067 + +1.4 5,565,372 + PS417_25775 0.28 -0.1 5,565,377 + PS417_25775 0.28 +0.2 5,565,417 + PS417_25775 0.32 -0.4 5,565,418 - PS417_25775 0.32 -0.0 5,565,492 + -0.8 5,565,493 - PS417_25775 0.40 -0.0 5,565,509 + PS417_25775 0.42 +0.2 5,565,509 + PS417_25775 0.42 -0.8 5,565,726 - +1.1 5,565,849 - PS417_25775 0.77 -1.2 5,565,849 - PS417_25775 0.77 -0.8 5,565,849 - PS417_25775 0.77 +0.4 5,565,895 + PS417_25775 0.81 +0.3 5,565,896 - PS417_25775 0.81 +0.0 5,565,971 - PS417_25775 0.89 +0.0
Or see this region's nucleotide sequence