Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00155 and PS417_00160 are separated by 1 nucleotides PS417_00160 and PS417_00165 are separated by 48 nucleotides PS417_00165 and PS417_00170 are separated by 183 nucleotides
PS417_00155: PS417_00155 - 2-dehydro-3-deoxygalactonokinase, at 32,977 to 33,936
_00155
PS417_00160: PS417_00160 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 33,938 to 34,558
_00160
PS417_00165: PS417_00165 - galactonate dehydratase, at 34,607 to 35,755
_00165
PS417_00170: PS417_00170 - glucarate transporter, at 35,939 to 37,246
_00170
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 33.713 kb on - strand, within PS417_00155 at 34.080 kb on - strand at 34.426 kb on + strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.427 kb on - strand, within PS417_00160 at 34.492 kb on + strand, within PS417_00160 at 34.529 kb on + strand at 34.530 kb on - strand at 34.530 kb on - strand at 34.591 kb on - strand at 34.591 kb on - strand at 34.591 kb on - strand at 34.592 kb on + strand at 34.602 kb on - strand at 34.758 kb on - strand, within PS417_00165 at 34.955 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.357 kb on + strand, within PS417_00165 at 35.438 kb on + strand, within PS417_00165 at 35.516 kb on + strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.582 kb on + strand, within PS417_00165 at 35.582 kb on + strand, within PS417_00165 at 35.609 kb on + strand, within PS417_00165 at 35.609 kb on + strand, within PS417_00165 at 35.672 kb on + strand at 35.673 kb on - strand at 35.673 kb on - strand at 35.673 kb on - strand at 35.916 kb on + strand at 35.922 kb on + strand at 35.973 kb on + strand at 35.983 kb on + strand at 36.144 kb on - strand, within PS417_00170 at 36.201 kb on + strand, within PS417_00170 at 36.201 kb on + strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.203 kb on + strand, within PS417_00170 at 36.204 kb on - strand, within PS417_00170 at 36.204 kb on - strand, within PS417_00170 at 36.204 kb on - strand, within PS417_00170 at 36.386 kb on + strand, within PS417_00170 at 36.386 kb on + strand, within PS417_00170 at 36.387 kb on - strand, within PS417_00170 at 36.683 kb on + strand, within PS417_00170 at 36.683 kb on + strand, within PS417_00170 at 36.684 kb on - strand, within PS417_00170 at 36.684 kb on - strand, within PS417_00170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 33,713 - PS417_00155 0.77 +0.6 34,080 - +2.6 34,426 + PS417_00160 0.79 -1.8 34,427 - PS417_00160 0.79 +0.3 34,427 - PS417_00160 0.79 +0.1 34,427 - PS417_00160 0.79 -1.0 34,492 + PS417_00160 0.89 -0.6 34,529 + -2.5 34,530 - +0.0 34,530 - +0.1 34,591 - -0.0 34,591 - +0.0 34,591 - +1.0 34,592 + -0.2 34,602 - -0.6 34,758 - PS417_00165 0.13 +0.3 34,955 + PS417_00165 0.30 -0.9 35,213 + PS417_00165 0.53 -0.8 35,213 + PS417_00165 0.53 -0.1 35,213 + PS417_00165 0.53 -0.5 35,214 - PS417_00165 0.53 -1.2 35,214 - PS417_00165 0.53 +1.4 35,357 + PS417_00165 0.65 -0.7 35,438 + PS417_00165 0.72 -0.9 35,516 + PS417_00165 0.79 -0.5 35,517 - PS417_00165 0.79 -0.3 35,517 - PS417_00165 0.79 -0.5 35,517 - PS417_00165 0.79 -2.1 35,582 + PS417_00165 0.85 -0.5 35,582 + PS417_00165 0.85 -0.6 35,609 + PS417_00165 0.87 -0.3 35,609 + PS417_00165 0.87 -0.2 35,672 + -0.3 35,673 - +1.6 35,673 - -0.4 35,673 - -0.4 35,916 + -0.4 35,922 + +0.3 35,973 + +0.0 35,983 + -0.6 36,144 - PS417_00170 0.16 +0.6 36,201 + PS417_00170 0.20 -0.2 36,201 + PS417_00170 0.20 -0.3 36,202 - PS417_00170 0.20 -0.0 36,202 - PS417_00170 0.20 -0.1 36,202 - PS417_00170 0.20 +0.2 36,202 - PS417_00170 0.20 +0.3 36,203 + PS417_00170 0.20 -2.8 36,204 - PS417_00170 0.20 -0.2 36,204 - PS417_00170 0.20 +0.8 36,204 - PS417_00170 0.20 -0.1 36,386 + PS417_00170 0.34 +0.2 36,386 + PS417_00170 0.34 +0.2 36,387 - PS417_00170 0.34 +0.7 36,683 + PS417_00170 0.57 +0.5 36,683 + PS417_00170 0.57 -0.1 36,684 - PS417_00170 0.57 +0.4 36,684 - PS417_00170 0.57 -0.0
Or see this region's nucleotide sequence