Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21225

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21210 and ABIE41_RS21215 overlap by 4 nucleotidesABIE41_RS21215 and ABIE41_RS21220 overlap by 1 nucleotidesABIE41_RS21220 and ABIE41_RS21225 overlap by 1 nucleotidesABIE41_RS21225 and ABIE41_RS21230 are separated by 94 nucleotidesABIE41_RS21230 and ABIE41_RS21235 are separated by 86 nucleotides ABIE41_RS21210: ABIE41_RS21210 - uracil-DNA glycosylase family protein, at 4,360,118 to 4,360,744 _RS21210 ABIE41_RS21215: ABIE41_RS21215 - hypothetical protein, at 4,360,741 to 4,361,208 _RS21215 ABIE41_RS21220: ABIE41_RS21220 - hypothetical protein, at 4,361,208 to 4,361,678 _RS21220 ABIE41_RS21225: ABIE41_RS21225 - glutathione S-transferase, at 4,361,678 to 4,362,289 _RS21225 ABIE41_RS21230: ABIE41_RS21230 - thermonuclease family protein, at 4,362,384 to 4,362,935 _RS21230 ABIE41_RS21235: ABIE41_RS21235 - HAMP domain-containing sensor histidine kinase, at 4,363,022 to 4,364,539 _RS21235 Position (kb) 4361 4362 4363Strain fitness (log2 ratio) -2 -1 0 1at 4360.892 kb on + strand, within ABIE41_RS21215at 4360.892 kb on + strand, within ABIE41_RS21215at 4360.892 kb on + strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.893 kb on - strand, within ABIE41_RS21215at 4360.955 kb on + strand, within ABIE41_RS21215at 4360.959 kb on - strand, within ABIE41_RS21215at 4360.959 kb on - strand, within ABIE41_RS21215at 4361.276 kb on - strand, within ABIE41_RS21220at 4361.276 kb on - strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.371 kb on + strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.372 kb on - strand, within ABIE41_RS21220at 4361.373 kb on - strand, within ABIE41_RS21220at 4361.431 kb on + strand, within ABIE41_RS21220at 4361.431 kb on + strand, within ABIE41_RS21220at 4361.432 kb on - strand, within ABIE41_RS21220at 4361.432 kb on - strand, within ABIE41_RS21220at 4361.434 kb on + strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.435 kb on - strand, within ABIE41_RS21220at 4361.437 kb on + strand, within ABIE41_RS21220at 4361.437 kb on + strand, within ABIE41_RS21220at 4361.554 kb on + strand, within ABIE41_RS21220at 4361.555 kb on - strand, within ABIE41_RS21220at 4361.797 kb on + strand, within ABIE41_RS21225at 4361.798 kb on - strand, within ABIE41_RS21225at 4362.072 kb on + strand, within ABIE41_RS21225at 4362.073 kb on - strand, within ABIE41_RS21225at 4362.280 kb on - strandat 4362.280 kb on - strandat 4362.280 kb on - strandat 4362.373 kb on + strandat 4362.373 kb on + strandat 4362.373 kb on + strandat 4362.374 kb on - strandat 4362.374 kb on - strandat 4362.374 kb on - strandat 4362.482 kb on - strand, within ABIE41_RS21230at 4362.491 kb on - strand, within ABIE41_RS21230at 4362.572 kb on - strand, within ABIE41_RS21230at 4362.947 kb on + strandat 4362.948 kb on - strandat 4363.271 kb on + strand, within ABIE41_RS21235at 4363.271 kb on + strand, within ABIE41_RS21235at 4363.271 kb on + strand, within ABIE41_RS21235at 4363.271 kb on + strand, within ABIE41_RS21235at 4363.271 kb on + strand, within ABIE41_RS21235at 4363.272 kb on - strand, within ABIE41_RS21235

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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4,360,892 + ABIE41_RS21215 0.32 -2.0
4,360,892 + ABIE41_RS21215 0.32 -0.7
4,360,892 + ABIE41_RS21215 0.32 -0.0
4,360,893 - ABIE41_RS21215 0.32 +0.3
4,360,893 - ABIE41_RS21215 0.32 -0.8
4,360,893 - ABIE41_RS21215 0.32 +0.1
4,360,893 - ABIE41_RS21215 0.32 -0.9
4,360,893 - ABIE41_RS21215 0.32 -0.2
4,360,955 + ABIE41_RS21215 0.46 +0.1
4,360,959 - ABIE41_RS21215 0.47 -0.9
4,360,959 - ABIE41_RS21215 0.47 +1.3
4,361,276 - ABIE41_RS21220 0.14 -0.5
4,361,276 - ABIE41_RS21220 0.14 -1.8
4,361,371 + ABIE41_RS21220 0.35 +0.9
4,361,371 + ABIE41_RS21220 0.35 -0.4
4,361,371 + ABIE41_RS21220 0.35 +0.5
4,361,371 + ABIE41_RS21220 0.35 -2.0
4,361,372 - ABIE41_RS21220 0.35 +0.3
4,361,372 - ABIE41_RS21220 0.35 +0.6
4,361,372 - ABIE41_RS21220 0.35 -0.0
4,361,372 - ABIE41_RS21220 0.35 +1.0
4,361,372 - ABIE41_RS21220 0.35 -0.4
4,361,373 - ABIE41_RS21220 0.35 -0.7
4,361,431 + ABIE41_RS21220 0.47 -0.7
4,361,431 + ABIE41_RS21220 0.47 +0.7
4,361,432 - ABIE41_RS21220 0.48 +0.0
4,361,432 - ABIE41_RS21220 0.48 +0.1
4,361,434 + ABIE41_RS21220 0.48 -0.3
4,361,435 - ABIE41_RS21220 0.48 -0.2
4,361,435 - ABIE41_RS21220 0.48 +0.8
4,361,435 - ABIE41_RS21220 0.48 -0.6
4,361,435 - ABIE41_RS21220 0.48 +1.7
4,361,437 + ABIE41_RS21220 0.49 +0.6
4,361,437 + ABIE41_RS21220 0.49 -1.5
4,361,554 + ABIE41_RS21220 0.73 +0.3
4,361,555 - ABIE41_RS21220 0.74 -2.7
4,361,797 + ABIE41_RS21225 0.19 +1.6
4,361,798 - ABIE41_RS21225 0.20 +0.7
4,362,072 + ABIE41_RS21225 0.64 -0.5
4,362,073 - ABIE41_RS21225 0.65 -0.9
4,362,280 - -0.9
4,362,280 - +0.4
4,362,280 - +0.1
4,362,373 + -0.7
4,362,373 + +0.3
4,362,373 + -1.3
4,362,374 - -0.2
4,362,374 - -0.2
4,362,374 - -2.0
4,362,482 - ABIE41_RS21230 0.18 +0.6
4,362,491 - ABIE41_RS21230 0.19 -1.0
4,362,572 - ABIE41_RS21230 0.34 -0.7
4,362,947 + -0.8
4,362,948 - +0.3
4,363,271 + ABIE41_RS21235 0.16 +0.1
4,363,271 + ABIE41_RS21235 0.16 +0.3
4,363,271 + ABIE41_RS21235 0.16 +0.0
4,363,271 + ABIE41_RS21235 0.16 +0.9
4,363,271 + ABIE41_RS21235 0.16 +0.1
4,363,272 - ABIE41_RS21235 0.16 -1.2

Or see this region's nucleotide sequence