Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20735 and ABIE41_RS20740 overlap by 4 nucleotides ABIE41_RS20740 and ABIE41_RS20745 are separated by 100 nucleotides
ABIE41_RS20735: ABIE41_RS20735 - DUF2309 domain-containing protein, at 4,261,232 to 4,263,634
_RS20735
ABIE41_RS20740: ABIE41_RS20740 - NADH-quinone oxidoreductase subunit L, at 4,263,631 to 4,265,217
_RS20740
ABIE41_RS20745: ABIE41_RS20745 - LysR family transcriptional regulator, at 4,265,318 to 4,266,193
_RS20745
Position (kb) 4263
4264
4265
4266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4262.739 kb on + strand, within ABIE41_RS20735 at 4262.739 kb on + strand, within ABIE41_RS20735 at 4262.740 kb on - strand, within ABIE41_RS20735 at 4262.953 kb on - strand, within ABIE41_RS20735 at 4262.994 kb on + strand, within ABIE41_RS20735 at 4262.995 kb on - strand, within ABIE41_RS20735 at 4262.995 kb on - strand, within ABIE41_RS20735 at 4262.995 kb on - strand, within ABIE41_RS20735 at 4263.153 kb on + strand, within ABIE41_RS20735 at 4263.153 kb on + strand, within ABIE41_RS20735 at 4263.154 kb on - strand, within ABIE41_RS20735 at 4263.170 kb on - strand, within ABIE41_RS20735 at 4263.171 kb on - strand, within ABIE41_RS20735 at 4263.426 kb on + strand at 4263.426 kb on + strand at 4263.716 kb on + strand at 4263.917 kb on + strand, within ABIE41_RS20740 at 4263.917 kb on + strand, within ABIE41_RS20740 at 4263.917 kb on + strand, within ABIE41_RS20740 at 4263.918 kb on - strand, within ABIE41_RS20740 at 4263.918 kb on - strand, within ABIE41_RS20740 at 4264.004 kb on + strand, within ABIE41_RS20740 at 4264.004 kb on + strand, within ABIE41_RS20740 at 4264.004 kb on + strand, within ABIE41_RS20740 at 4264.004 kb on + strand, within ABIE41_RS20740 at 4264.005 kb on - strand, within ABIE41_RS20740 at 4264.005 kb on - strand, within ABIE41_RS20740 at 4264.092 kb on - strand, within ABIE41_RS20740 at 4264.092 kb on - strand, within ABIE41_RS20740 at 4264.092 kb on - strand, within ABIE41_RS20740 at 4264.220 kb on + strand, within ABIE41_RS20740 at 4264.220 kb on + strand, within ABIE41_RS20740 at 4264.220 kb on + strand, within ABIE41_RS20740 at 4264.916 kb on + strand, within ABIE41_RS20740 at 4264.916 kb on + strand, within ABIE41_RS20740 at 4264.916 kb on + strand, within ABIE41_RS20740 at 4264.916 kb on + strand, within ABIE41_RS20740 at 4264.917 kb on - strand, within ABIE41_RS20740 at 4264.917 kb on - strand, within ABIE41_RS20740 at 4264.917 kb on - strand, within ABIE41_RS20740 at 4264.917 kb on - strand, within ABIE41_RS20740 at 4264.917 kb on - strand, within ABIE41_RS20740 at 4264.917 kb on - strand, within ABIE41_RS20740 at 4264.917 kb on - strand, within ABIE41_RS20740 at 4265.255 kb on - strand at 4265.255 kb on - strand at 4265.334 kb on - strand at 4265.334 kb on - strand at 4265.914 kb on + strand, within ABIE41_RS20745
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,262,739 + ABIE41_RS20735 0.63 +0.2 4,262,739 + ABIE41_RS20735 0.63 +2.1 4,262,740 - ABIE41_RS20735 0.63 +0.4 4,262,953 - ABIE41_RS20735 0.72 -0.9 4,262,994 + ABIE41_RS20735 0.73 -1.7 4,262,995 - ABIE41_RS20735 0.73 -0.3 4,262,995 - ABIE41_RS20735 0.73 -0.7 4,262,995 - ABIE41_RS20735 0.73 +0.2 4,263,153 + ABIE41_RS20735 0.80 -0.9 4,263,153 + ABIE41_RS20735 0.80 -1.3 4,263,154 - ABIE41_RS20735 0.80 -0.7 4,263,170 - ABIE41_RS20735 0.81 -0.6 4,263,171 - ABIE41_RS20735 0.81 +1.1 4,263,426 + +2.1 4,263,426 + -0.2 4,263,716 + +1.0 4,263,917 + ABIE41_RS20740 0.18 +0.2 4,263,917 + ABIE41_RS20740 0.18 +1.6 4,263,917 + ABIE41_RS20740 0.18 +0.6 4,263,918 - ABIE41_RS20740 0.18 +0.4 4,263,918 - ABIE41_RS20740 0.18 -1.9 4,264,004 + ABIE41_RS20740 0.24 +2.1 4,264,004 + ABIE41_RS20740 0.24 -0.6 4,264,004 + ABIE41_RS20740 0.24 -0.1 4,264,004 + ABIE41_RS20740 0.24 -1.0 4,264,005 - ABIE41_RS20740 0.24 -0.2 4,264,005 - ABIE41_RS20740 0.24 -0.7 4,264,092 - ABIE41_RS20740 0.29 -0.6 4,264,092 - ABIE41_RS20740 0.29 +0.3 4,264,092 - ABIE41_RS20740 0.29 -0.9 4,264,220 + ABIE41_RS20740 0.37 -1.4 4,264,220 + ABIE41_RS20740 0.37 +0.4 4,264,220 + ABIE41_RS20740 0.37 -0.9 4,264,916 + ABIE41_RS20740 0.81 -0.6 4,264,916 + ABIE41_RS20740 0.81 +0.1 4,264,916 + ABIE41_RS20740 0.81 -0.2 4,264,916 + ABIE41_RS20740 0.81 +1.3 4,264,917 - ABIE41_RS20740 0.81 +0.4 4,264,917 - ABIE41_RS20740 0.81 -1.7 4,264,917 - ABIE41_RS20740 0.81 +0.5 4,264,917 - ABIE41_RS20740 0.81 -0.1 4,264,917 - ABIE41_RS20740 0.81 +0.7 4,264,917 - ABIE41_RS20740 0.81 -1.1 4,264,917 - ABIE41_RS20740 0.81 -2.2 4,265,255 - -1.7 4,265,255 - -0.3 4,265,334 - -0.3 4,265,334 - -0.4 4,265,914 + ABIE41_RS20745 0.68 +0.5
Or see this region's nucleotide sequence