Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20555 and ABIE41_RS20560 are separated by 12 nucleotides ABIE41_RS20560 and ABIE41_RS20565 are separated by 156 nucleotides ABIE41_RS20565 and ABIE41_RS20570 are separated by 3 nucleotides
ABIE41_RS20555: ABIE41_RS20555 - DUF4286 family protein, at 4,226,499 to 4,227,185
_RS20555
ABIE41_RS20560: ABIE41_RS20560 - 3-ketoacyl-ACP reductase, at 4,227,198 to 4,227,941
_RS20560
ABIE41_RS20565: ABIE41_RS20565 - CoA-transferase, at 4,228,098 to 4,229,735
_RS20565
ABIE41_RS20570: ABIE41_RS20570 - ketopantoate reductase family protein, at 4,229,739 to 4,230,674
_RS20570
Position (kb) 4228
4229
4230 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4227.104 kb on + strand, within ABIE41_RS20555 at 4227.355 kb on + strand, within ABIE41_RS20560 at 4227.355 kb on + strand, within ABIE41_RS20560 at 4227.355 kb on + strand, within ABIE41_RS20560 at 4227.356 kb on - strand, within ABIE41_RS20560 at 4227.490 kb on + strand, within ABIE41_RS20560 at 4227.491 kb on - strand, within ABIE41_RS20560 at 4227.790 kb on + strand, within ABIE41_RS20560 at 4227.791 kb on - strand, within ABIE41_RS20560 at 4227.791 kb on - strand, within ABIE41_RS20560 at 4227.791 kb on - strand, within ABIE41_RS20560 at 4227.791 kb on - strand, within ABIE41_RS20560 at 4227.791 kb on - strand, within ABIE41_RS20560 at 4228.806 kb on + strand, within ABIE41_RS20565 at 4228.851 kb on + strand, within ABIE41_RS20565 at 4228.851 kb on + strand, within ABIE41_RS20565 at 4228.852 kb on - strand, within ABIE41_RS20565 at 4228.863 kb on + strand, within ABIE41_RS20565 at 4228.863 kb on + strand, within ABIE41_RS20565 at 4228.863 kb on + strand, within ABIE41_RS20565 at 4228.864 kb on - strand, within ABIE41_RS20565 at 4229.115 kb on + strand, within ABIE41_RS20565 at 4229.115 kb on + strand, within ABIE41_RS20565 at 4229.116 kb on - strand, within ABIE41_RS20565 at 4229.116 kb on - strand, within ABIE41_RS20565 at 4229.154 kb on + strand, within ABIE41_RS20565 at 4229.154 kb on + strand, within ABIE41_RS20565 at 4229.155 kb on - strand, within ABIE41_RS20565 at 4229.412 kb on + strand, within ABIE41_RS20565 at 4229.412 kb on + strand, within ABIE41_RS20565 at 4229.412 kb on + strand, within ABIE41_RS20565 at 4229.412 kb on + strand, within ABIE41_RS20565 at 4229.413 kb on - strand, within ABIE41_RS20565 at 4229.413 kb on - strand, within ABIE41_RS20565 at 4229.413 kb on - strand, within ABIE41_RS20565 at 4229.553 kb on - strand, within ABIE41_RS20565 at 4229.845 kb on + strand, within ABIE41_RS20570 at 4229.845 kb on + strand, within ABIE41_RS20570 at 4229.845 kb on + strand, within ABIE41_RS20570 at 4229.845 kb on + strand, within ABIE41_RS20570 at 4229.845 kb on + strand, within ABIE41_RS20570 at 4229.846 kb on - strand, within ABIE41_RS20570 at 4229.846 kb on - strand, within ABIE41_RS20570 at 4229.846 kb on - strand, within ABIE41_RS20570 at 4229.846 kb on - strand, within ABIE41_RS20570 at 4229.846 kb on - strand, within ABIE41_RS20570 at 4229.846 kb on - strand, within ABIE41_RS20570 at 4230.247 kb on + strand, within ABIE41_RS20570 at 4230.247 kb on + strand, within ABIE41_RS20570 at 4230.248 kb on - strand, within ABIE41_RS20570 at 4230.409 kb on - strand, within ABIE41_RS20570
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,227,104 + ABIE41_RS20555 0.88 -2.3 4,227,355 + ABIE41_RS20560 0.21 -1.2 4,227,355 + ABIE41_RS20560 0.21 -0.7 4,227,355 + ABIE41_RS20560 0.21 +0.1 4,227,356 - ABIE41_RS20560 0.21 -2.5 4,227,490 + ABIE41_RS20560 0.39 +0.7 4,227,491 - ABIE41_RS20560 0.39 -2.1 4,227,790 + ABIE41_RS20560 0.80 -0.5 4,227,791 - ABIE41_RS20560 0.80 +0.1 4,227,791 - ABIE41_RS20560 0.80 +0.8 4,227,791 - ABIE41_RS20560 0.80 -0.4 4,227,791 - ABIE41_RS20560 0.80 -1.3 4,227,791 - ABIE41_RS20560 0.80 -0.4 4,228,806 + ABIE41_RS20565 0.43 +2.6 4,228,851 + ABIE41_RS20565 0.46 +0.1 4,228,851 + ABIE41_RS20565 0.46 -0.2 4,228,852 - ABIE41_RS20565 0.46 -0.1 4,228,863 + ABIE41_RS20565 0.47 -1.0 4,228,863 + ABIE41_RS20565 0.47 -0.1 4,228,863 + ABIE41_RS20565 0.47 -0.0 4,228,864 - ABIE41_RS20565 0.47 -0.2 4,229,115 + ABIE41_RS20565 0.62 -0.8 4,229,115 + ABIE41_RS20565 0.62 -1.0 4,229,116 - ABIE41_RS20565 0.62 -0.1 4,229,116 - ABIE41_RS20565 0.62 +0.3 4,229,154 + ABIE41_RS20565 0.64 -0.5 4,229,154 + ABIE41_RS20565 0.64 +2.2 4,229,155 - ABIE41_RS20565 0.65 -0.0 4,229,412 + ABIE41_RS20565 0.80 -1.2 4,229,412 + ABIE41_RS20565 0.80 +1.6 4,229,412 + ABIE41_RS20565 0.80 -1.6 4,229,412 + ABIE41_RS20565 0.80 -0.7 4,229,413 - ABIE41_RS20565 0.80 +0.2 4,229,413 - ABIE41_RS20565 0.80 -0.4 4,229,413 - ABIE41_RS20565 0.80 +2.2 4,229,553 - ABIE41_RS20565 0.89 -1.3 4,229,845 + ABIE41_RS20570 0.11 -0.6 4,229,845 + ABIE41_RS20570 0.11 +1.0 4,229,845 + ABIE41_RS20570 0.11 -0.3 4,229,845 + ABIE41_RS20570 0.11 +1.8 4,229,845 + ABIE41_RS20570 0.11 -0.1 4,229,846 - ABIE41_RS20570 0.11 -1.7 4,229,846 - ABIE41_RS20570 0.11 -0.1 4,229,846 - ABIE41_RS20570 0.11 +1.0 4,229,846 - ABIE41_RS20570 0.11 -0.5 4,229,846 - ABIE41_RS20570 0.11 -2.4 4,229,846 - ABIE41_RS20570 0.11 -1.1 4,230,247 + ABIE41_RS20570 0.54 +0.2 4,230,247 + ABIE41_RS20570 0.54 -0.7 4,230,248 - ABIE41_RS20570 0.54 -1.0 4,230,409 - ABIE41_RS20570 0.72 -0.9
Or see this region's nucleotide sequence