Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18645

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18640 and ABIE41_RS18645 overlap by 4 nucleotidesABIE41_RS18645 and ABIE41_RS18650 are separated by 111 nucleotides ABIE41_RS18640: ABIE41_RS18640 - efflux RND transporter periplasmic adaptor subunit, at 3,838,839 to 3,839,912 _RS18640 ABIE41_RS18645: ABIE41_RS18645 - efflux RND transporter periplasmic adaptor subunit, at 3,839,909 to 3,841,018 _RS18645 ABIE41_RS18650: ABIE41_RS18650 - TetR/AcrR family transcriptional regulator, at 3,841,130 to 3,841,783 _RS18650 Position (kb) 3839 3840 3841 3842Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3839.750 kb on - strand, within ABIE41_RS18640at 3839.790 kb on + strand, within ABIE41_RS18640at 3839.790 kb on + strand, within ABIE41_RS18640at 3839.790 kb on + strand, within ABIE41_RS18640at 3839.791 kb on - strand, within ABIE41_RS18640at 3839.791 kb on - strand, within ABIE41_RS18640at 3840.034 kb on - strand, within ABIE41_RS18645at 3840.476 kb on - strand, within ABIE41_RS18645at 3840.573 kb on + strand, within ABIE41_RS18645at 3840.574 kb on - strand, within ABIE41_RS18645at 3840.574 kb on - strand, within ABIE41_RS18645at 3841.301 kb on + strand, within ABIE41_RS18650at 3841.301 kb on + strand, within ABIE41_RS18650at 3841.301 kb on + strand, within ABIE41_RS18650at 3841.301 kb on + strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.302 kb on - strand, within ABIE41_RS18650at 3841.835 kb on + strandat 3841.836 kb on - strandat 3841.836 kb on - strandat 3841.836 kb on - strandat 3841.836 kb on - strandat 3841.836 kb on - strandat 3841.847 kb on + strandat 3841.847 kb on + strandat 3841.847 kb on + strandat 3841.848 kb on - strandat 3841.848 kb on - strandat 3841.848 kb on - strandat 3841.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,839,750 - ABIE41_RS18640 0.85 +1.8
3,839,790 + ABIE41_RS18640 0.89 +1.8
3,839,790 + ABIE41_RS18640 0.89 -0.4
3,839,790 + ABIE41_RS18640 0.89 +0.1
3,839,791 - ABIE41_RS18640 0.89 +0.6
3,839,791 - ABIE41_RS18640 0.89 -0.6
3,840,034 - ABIE41_RS18645 0.11 -0.4
3,840,476 - ABIE41_RS18645 0.51 +0.3
3,840,573 + ABIE41_RS18645 0.60 -0.2
3,840,574 - ABIE41_RS18645 0.60 +0.8
3,840,574 - ABIE41_RS18645 0.60 +1.7
3,841,301 + ABIE41_RS18650 0.26 -1.7
3,841,301 + ABIE41_RS18650 0.26 -0.7
3,841,301 + ABIE41_RS18650 0.26 +0.3
3,841,301 + ABIE41_RS18650 0.26 -1.9
3,841,302 - ABIE41_RS18650 0.26 -0.5
3,841,302 - ABIE41_RS18650 0.26 -3.2
3,841,302 - ABIE41_RS18650 0.26 +1.0
3,841,302 - ABIE41_RS18650 0.26 -1.5
3,841,302 - ABIE41_RS18650 0.26 -0.6
3,841,302 - ABIE41_RS18650 0.26 +0.2
3,841,302 - ABIE41_RS18650 0.26 -0.6
3,841,302 - ABIE41_RS18650 0.26 -1.3
3,841,835 + -0.1
3,841,836 - +1.3
3,841,836 - -0.8
3,841,836 - +0.4
3,841,836 - +0.9
3,841,836 - -2.8
3,841,847 + -0.2
3,841,847 + +0.2
3,841,847 + -0.3
3,841,848 - +0.7
3,841,848 - +0.3
3,841,848 - +0.2
3,841,868 + -1.1

Or see this region's nucleotide sequence