Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05330

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05320 and ABIE41_RS05325 are separated by 171 nucleotidesABIE41_RS05325 and ABIE41_RS05330 are separated by 28 nucleotidesABIE41_RS05330 and ABIE41_RS05335 are separated by 312 nucleotides ABIE41_RS05320: ABIE41_RS05320 - ferredoxin FdxA, at 1,100,254 to 1,100,592 _RS05320 ABIE41_RS05325: ABIE41_RS05325 - RNA-binding S4 domain-containing protein, at 1,100,764 to 1,101,075 _RS05325 ABIE41_RS05330: ABIE41_RS05330 - helicase-related protein, at 1,101,104 to 1,104,457 _RS05330 ABIE41_RS05335: ABIE41_RS05335 - alpha/beta hydrolase, at 1,104,770 to 1,105,657 _RS05335 Position (kb) 1101 1102 1103 1104 1105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1100.138 kb on - strandat 1100.166 kb on - strandat 1100.212 kb on + strandat 1100.213 kb on - strandat 1100.628 kb on - strandat 1100.668 kb on + strandat 1100.828 kb on + strand, within ABIE41_RS05325at 1100.828 kb on + strand, within ABIE41_RS05325at 1100.828 kb on + strand, within ABIE41_RS05325at 1101.106 kb on - strandat 1101.106 kb on - strandat 1101.106 kb on - strandat 1101.106 kb on - strandat 1102.020 kb on + strand, within ABIE41_RS05330at 1102.020 kb on + strand, within ABIE41_RS05330at 1102.020 kb on + strand, within ABIE41_RS05330at 1102.021 kb on - strand, within ABIE41_RS05330at 1102.410 kb on + strand, within ABIE41_RS05330at 1102.410 kb on + strand, within ABIE41_RS05330at 1102.410 kb on + strand, within ABIE41_RS05330at 1102.410 kb on + strand, within ABIE41_RS05330at 1102.411 kb on - strand, within ABIE41_RS05330at 1102.411 kb on - strand, within ABIE41_RS05330at 1102.411 kb on - strand, within ABIE41_RS05330at 1102.411 kb on - strand, within ABIE41_RS05330at 1102.537 kb on - strand, within ABIE41_RS05330at 1102.537 kb on - strand, within ABIE41_RS05330at 1102.537 kb on - strand, within ABIE41_RS05330at 1102.537 kb on - strand, within ABIE41_RS05330at 1102.537 kb on - strand, within ABIE41_RS05330at 1102.904 kb on - strand, within ABIE41_RS05330at 1103.081 kb on + strand, within ABIE41_RS05330at 1103.081 kb on + strand, within ABIE41_RS05330at 1103.081 kb on + strand, within ABIE41_RS05330at 1103.082 kb on - strand, within ABIE41_RS05330at 1103.082 kb on - strand, within ABIE41_RS05330at 1103.082 kb on - strand, within ABIE41_RS05330at 1103.082 kb on - strand, within ABIE41_RS05330at 1103.082 kb on - strand, within ABIE41_RS05330at 1103.082 kb on - strand, within ABIE41_RS05330at 1103.274 kb on + strand, within ABIE41_RS05330at 1103.274 kb on + strand, within ABIE41_RS05330at 1103.275 kb on - strand, within ABIE41_RS05330at 1103.275 kb on - strand, within ABIE41_RS05330at 1103.323 kb on - strand, within ABIE41_RS05330at 1103.704 kb on + strand, within ABIE41_RS05330at 1103.784 kb on + strand, within ABIE41_RS05330at 1103.784 kb on + strand, within ABIE41_RS05330at 1103.784 kb on + strand, within ABIE41_RS05330at 1103.785 kb on - strand, within ABIE41_RS05330at 1103.785 kb on - strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.901 kb on + strand, within ABIE41_RS05330at 1103.901 kb on + strand, within ABIE41_RS05330at 1103.901 kb on + strand, within ABIE41_RS05330at 1103.902 kb on - strand, within ABIE41_RS05330at 1103.902 kb on - strand, within ABIE41_RS05330at 1104.535 kb on + strandat 1104.540 kb on + strandat 1104.540 kb on + strandat 1104.541 kb on - strandat 1104.541 kb on - strandat 1104.541 kb on - strandat 1104.720 kb on + strandat 1104.720 kb on + strandat 1104.720 kb on + strandat 1104.720 kb on + strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1105.131 kb on + strand, within ABIE41_RS05335at 1105.131 kb on + strand, within ABIE41_RS05335at 1105.131 kb on + strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.201 kb on - strand, within ABIE41_RS05335at 1105.323 kb on + strand, within ABIE41_RS05335at 1105.323 kb on + strand, within ABIE41_RS05335at 1105.324 kb on - strand, within ABIE41_RS05335at 1105.324 kb on - strand, within ABIE41_RS05335

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,100,138 - +1.5
1,100,166 - +1.1
1,100,212 + +1.2
1,100,213 - -1.3
1,100,628 - -3.0
1,100,668 + -1.7
1,100,828 + ABIE41_RS05325 0.21 -1.9
1,100,828 + ABIE41_RS05325 0.21 +0.2
1,100,828 + ABIE41_RS05325 0.21 -1.7
1,101,106 - +0.6
1,101,106 - +1.1
1,101,106 - +0.4
1,101,106 - -0.6
1,102,020 + ABIE41_RS05330 0.27 -2.8
1,102,020 + ABIE41_RS05330 0.27 -2.1
1,102,020 + ABIE41_RS05330 0.27 -1.3
1,102,021 - ABIE41_RS05330 0.27 -1.9
1,102,410 + ABIE41_RS05330 0.39 -1.9
1,102,410 + ABIE41_RS05330 0.39 +0.4
1,102,410 + ABIE41_RS05330 0.39 +0.5
1,102,410 + ABIE41_RS05330 0.39 -0.3
1,102,411 - ABIE41_RS05330 0.39 +0.3
1,102,411 - ABIE41_RS05330 0.39 +0.5
1,102,411 - ABIE41_RS05330 0.39 -1.1
1,102,411 - ABIE41_RS05330 0.39 +0.1
1,102,537 - ABIE41_RS05330 0.43 +2.2
1,102,537 - ABIE41_RS05330 0.43 +0.0
1,102,537 - ABIE41_RS05330 0.43 -0.9
1,102,537 - ABIE41_RS05330 0.43 +0.7
1,102,537 - ABIE41_RS05330 0.43 -0.6
1,102,904 - ABIE41_RS05330 0.54 +0.2
1,103,081 + ABIE41_RS05330 0.59 -1.1
1,103,081 + ABIE41_RS05330 0.59 -0.4
1,103,081 + ABIE41_RS05330 0.59 -0.2
1,103,082 - ABIE41_RS05330 0.59 -0.8
1,103,082 - ABIE41_RS05330 0.59 -0.3
1,103,082 - ABIE41_RS05330 0.59 -0.9
1,103,082 - ABIE41_RS05330 0.59 +2.2
1,103,082 - ABIE41_RS05330 0.59 +1.0
1,103,082 - ABIE41_RS05330 0.59 -0.3
1,103,274 + ABIE41_RS05330 0.65 +1.1
1,103,274 + ABIE41_RS05330 0.65 -0.5
1,103,275 - ABIE41_RS05330 0.65 +1.4
1,103,275 - ABIE41_RS05330 0.65 +0.5
1,103,323 - ABIE41_RS05330 0.66 -0.6
1,103,704 + ABIE41_RS05330 0.78 +1.0
1,103,784 + ABIE41_RS05330 0.80 -0.6
1,103,784 + ABIE41_RS05330 0.80 +0.6
1,103,784 + ABIE41_RS05330 0.80 +0.6
1,103,785 - ABIE41_RS05330 0.80 +1.8
1,103,785 - ABIE41_RS05330 0.80 +0.8
1,103,805 + ABIE41_RS05330 0.81 -1.1
1,103,805 + ABIE41_RS05330 0.81 +1.5
1,103,805 + ABIE41_RS05330 0.81 -0.3
1,103,805 + ABIE41_RS05330 0.81 +0.0
1,103,805 + ABIE41_RS05330 0.81 +3.4
1,103,805 + ABIE41_RS05330 0.81 +0.3
1,103,805 + ABIE41_RS05330 0.81 +0.4
1,103,805 + ABIE41_RS05330 0.81 +0.6
1,103,805 + ABIE41_RS05330 0.81 +0.2
1,103,805 + ABIE41_RS05330 0.81 +0.5
1,103,806 - ABIE41_RS05330 0.81 +0.8
1,103,806 - ABIE41_RS05330 0.81 +1.7
1,103,806 - ABIE41_RS05330 0.81 -0.1
1,103,806 - ABIE41_RS05330 0.81 +1.7
1,103,806 - ABIE41_RS05330 0.81 -1.6
1,103,901 + ABIE41_RS05330 0.83 +0.7
1,103,901 + ABIE41_RS05330 0.83 +1.5
1,103,901 + ABIE41_RS05330 0.83 +1.7
1,103,902 - ABIE41_RS05330 0.83 -0.2
1,103,902 - ABIE41_RS05330 0.83 +0.1
1,104,535 + +0.9
1,104,540 + -0.3
1,104,540 + +1.5
1,104,541 - +0.2
1,104,541 - +0.9
1,104,541 - +0.6
1,104,720 + +0.7
1,104,720 + -0.5
1,104,720 + +0.9
1,104,720 + +1.7
1,104,721 - +0.3
1,104,721 - +0.7
1,104,721 - -0.3
1,104,721 - -0.3
1,104,721 - +1.0
1,104,724 + +1.1
1,104,724 + +1.7
1,104,724 + +0.7
1,104,724 + -0.9
1,104,724 + +0.4
1,104,724 + +0.5
1,104,724 + -0.6
1,104,724 + +1.1
1,104,724 + +1.6
1,104,724 + -0.6
1,104,725 - -0.1
1,104,725 - +1.1
1,104,725 - -0.2
1,104,725 - +1.7
1,104,725 - +0.6
1,105,131 + ABIE41_RS05335 0.41 +0.1
1,105,131 + ABIE41_RS05335 0.41 +0.3
1,105,131 + ABIE41_RS05335 0.41 +1.5
1,105,132 - ABIE41_RS05335 0.41 -0.1
1,105,132 - ABIE41_RS05335 0.41 -0.6
1,105,132 - ABIE41_RS05335 0.41 +0.5
1,105,132 - ABIE41_RS05335 0.41 +0.5
1,105,132 - ABIE41_RS05335 0.41 +0.7
1,105,132 - ABIE41_RS05335 0.41 +1.2
1,105,201 - ABIE41_RS05335 0.49 +0.9
1,105,323 + ABIE41_RS05335 0.62 +0.1
1,105,323 + ABIE41_RS05335 0.62 +2.2
1,105,324 - ABIE41_RS05335 0.62 -1.2
1,105,324 - ABIE41_RS05335 0.62 +0.2

Or see this region's nucleotide sequence