Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03690 and ABIE41_RS03695 overlap by 1 nucleotides ABIE41_RS03695 and ABIE41_RS03700 are separated by 30 nucleotides
ABIE41_RS03690: ABIE41_RS03690 - P-loop NTPase, at 773,883 to 775,142
_RS03690
ABIE41_RS03695: ABIE41_RS03695 - CpaD family pilus assembly protein, at 775,142 to 775,882
_RS03695
ABIE41_RS03700: ABIE41_RS03700 - type II and III secretion system protein family protein, at 775,913 to 777,358
_RS03700
Position (kb) 775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 774.627 kb on + strand, within ABIE41_RS03690 at 774.627 kb on + strand, within ABIE41_RS03690 at 774.706 kb on + strand, within ABIE41_RS03690 at 774.706 kb on + strand, within ABIE41_RS03690 at 774.706 kb on + strand, within ABIE41_RS03690 at 774.706 kb on + strand, within ABIE41_RS03690 at 774.707 kb on - strand, within ABIE41_RS03690 at 774.707 kb on - strand, within ABIE41_RS03690 at 774.707 kb on - strand, within ABIE41_RS03690 at 774.707 kb on - strand, within ABIE41_RS03690 at 774.760 kb on + strand, within ABIE41_RS03690 at 774.761 kb on - strand, within ABIE41_RS03690 at 774.793 kb on + strand, within ABIE41_RS03690 at 774.794 kb on - strand, within ABIE41_RS03690 at 774.794 kb on - strand, within ABIE41_RS03690 at 775.486 kb on - strand, within ABIE41_RS03695 at 775.486 kb on - strand, within ABIE41_RS03695 at 775.486 kb on - strand, within ABIE41_RS03695 at 775.486 kb on - strand, within ABIE41_RS03695 at 775.944 kb on + strand at 775.944 kb on + strand at 775.945 kb on - strand at 775.945 kb on - strand at 775.945 kb on - strand at 775.945 kb on - strand at 775.945 kb on - strand at 775.945 kb on - strand at 775.977 kb on + strand at 775.977 kb on + strand at 775.977 kb on + strand at 775.977 kb on + strand at 775.977 kb on + strand at 775.977 kb on + strand at 775.978 kb on - strand at 775.978 kb on - strand at 775.978 kb on - strand at 776.082 kb on + strand, within ABIE41_RS03700 at 776.082 kb on + strand, within ABIE41_RS03700 at 776.083 kb on - strand, within ABIE41_RS03700 at 776.124 kb on + strand, within ABIE41_RS03700 at 776.124 kb on + strand, within ABIE41_RS03700 at 776.446 kb on - strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.873 kb on + strand, within ABIE41_RS03700 at 776.873 kb on + strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 774,627 + ABIE41_RS03690 0.59 +0.0 774,627 + ABIE41_RS03690 0.59 +2.3 774,706 + ABIE41_RS03690 0.65 -0.2 774,706 + ABIE41_RS03690 0.65 +2.5 774,706 + ABIE41_RS03690 0.65 +1.2 774,706 + ABIE41_RS03690 0.65 -0.9 774,707 - ABIE41_RS03690 0.65 +0.4 774,707 - ABIE41_RS03690 0.65 -1.1 774,707 - ABIE41_RS03690 0.65 -1.6 774,707 - ABIE41_RS03690 0.65 -1.5 774,760 + ABIE41_RS03690 0.70 -0.5 774,761 - ABIE41_RS03690 0.70 +0.9 774,793 + ABIE41_RS03690 0.72 -0.5 774,794 - ABIE41_RS03690 0.72 -0.5 774,794 - ABIE41_RS03690 0.72 +0.4 775,486 - ABIE41_RS03695 0.46 -2.7 775,486 - ABIE41_RS03695 0.46 -0.6 775,486 - ABIE41_RS03695 0.46 -1.4 775,486 - ABIE41_RS03695 0.46 -0.9 775,944 + +0.1 775,944 + +0.2 775,945 - -1.6 775,945 - -0.3 775,945 - -1.4 775,945 - -0.1 775,945 - -3.0 775,945 - -0.6 775,977 + -0.5 775,977 + +0.6 775,977 + +0.1 775,977 + +2.3 775,977 + -0.6 775,977 + +1.3 775,978 - +0.5 775,978 - -0.3 775,978 - -0.3 776,082 + ABIE41_RS03700 0.12 -0.5 776,082 + ABIE41_RS03700 0.12 -0.0 776,083 - ABIE41_RS03700 0.12 -1.8 776,124 + ABIE41_RS03700 0.15 -0.6 776,124 + ABIE41_RS03700 0.15 -0.5 776,446 - ABIE41_RS03700 0.37 -0.5 776,485 + ABIE41_RS03700 0.40 -1.5 776,485 + ABIE41_RS03700 0.40 +0.8 776,485 + ABIE41_RS03700 0.40 +0.3 776,485 + ABIE41_RS03700 0.40 -1.5 776,485 + ABIE41_RS03700 0.40 +0.8 776,485 + ABIE41_RS03700 0.40 +0.8 776,485 - ABIE41_RS03700 0.40 -0.2 776,486 - ABIE41_RS03700 0.40 +0.5 776,486 - ABIE41_RS03700 0.40 -0.5 776,486 - ABIE41_RS03700 0.40 -0.3 776,486 - ABIE41_RS03700 0.40 -0.8 776,486 - ABIE41_RS03700 0.40 -1.9 776,487 + ABIE41_RS03700 0.40 -0.2 776,487 + ABIE41_RS03700 0.40 +1.2 776,487 + ABIE41_RS03700 0.40 -0.1 776,487 + ABIE41_RS03700 0.40 -0.6 776,488 - ABIE41_RS03700 0.40 +0.1 776,488 - ABIE41_RS03700 0.40 -0.0 776,488 - ABIE41_RS03700 0.40 +1.3 776,488 - ABIE41_RS03700 0.40 -0.6 776,873 + ABIE41_RS03700 0.66 -1.0 776,873 + ABIE41_RS03700 0.66 +1.3 776,874 - ABIE41_RS03700 0.66 -1.5 776,874 - ABIE41_RS03700 0.66 +1.1 776,874 - ABIE41_RS03700 0.66 +1.0 776,874 - ABIE41_RS03700 0.66 +0.7
Or see this region's nucleotide sequence