Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00935 and ABIE41_RS00940 are separated by 10 nucleotides ABIE41_RS00940 and ABIE41_RS00945 are separated by 115 nucleotides
ABIE41_RS00935: ABIE41_RS00935 - DUF2231 domain-containing protein, at 178,896 to 179,435
_RS00935
ABIE41_RS00940: ABIE41_RS00940 - DUF4142 domain-containing protein, at 179,446 to 179,931
_RS00940
ABIE41_RS00945: ABIE41_RS00945 - PepSY domain-containing protein, at 180,047 to 180,346
_RS00945
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 178.038 kb on + strand at 178.039 kb on - strand at 178.039 kb on - strand at 178.286 kb on + strand at 178.286 kb on + strand at 178.287 kb on - strand at 178.287 kb on - strand at 178.332 kb on + strand at 178.332 kb on + strand at 178.332 kb on + strand at 178.332 kb on + strand at 178.332 kb on + strand at 178.332 kb on + strand at 178.333 kb on - strand at 178.333 kb on - strand at 178.333 kb on - strand at 178.496 kb on + strand at 178.496 kb on + strand at 178.497 kb on - strand at 178.760 kb on + strand at 178.760 kb on + strand at 178.761 kb on - strand at 178.761 kb on - strand at 178.761 kb on - strand at 178.761 kb on - strand at 178.761 kb on - strand at 178.773 kb on + strand at 178.773 kb on + strand at 178.774 kb on - strand at 178.774 kb on - strand at 178.774 kb on - strand at 178.775 kb on + strand at 178.828 kb on + strand at 178.828 kb on + strand at 178.828 kb on + strand at 178.828 kb on + strand at 178.829 kb on - strand at 178.829 kb on - strand at 178.999 kb on + strand, within ABIE41_RS00935 at 178.999 kb on + strand, within ABIE41_RS00935 at 178.999 kb on + strand, within ABIE41_RS00935 at 178.999 kb on + strand, within ABIE41_RS00935 at 179.000 kb on - strand, within ABIE41_RS00935 at 179.000 kb on - strand, within ABIE41_RS00935 at 179.000 kb on - strand, within ABIE41_RS00935 at 179.000 kb on - strand, within ABIE41_RS00935 at 179.000 kb on - strand, within ABIE41_RS00935 at 179.000 kb on - strand, within ABIE41_RS00935 at 179.062 kb on + strand, within ABIE41_RS00935 at 179.063 kb on - strand, within ABIE41_RS00935 at 179.063 kb on - strand, within ABIE41_RS00935 at 179.266 kb on + strand, within ABIE41_RS00935 at 179.268 kb on + strand, within ABIE41_RS00935 at 179.269 kb on - strand, within ABIE41_RS00935 at 179.269 kb on - strand, within ABIE41_RS00935 at 179.269 kb on - strand, within ABIE41_RS00935 at 179.302 kb on + strand, within ABIE41_RS00935 at 179.303 kb on - strand, within ABIE41_RS00935 at 179.382 kb on - strand at 179.414 kb on - strand at 179.414 kb on - strand at 179.426 kb on + strand at 179.426 kb on + strand at 179.448 kb on - strand at 179.448 kb on - strand at 179.448 kb on - strand at 179.555 kb on + strand, within ABIE41_RS00940 at 179.572 kb on + strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.573 kb on - strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.609 kb on + strand, within ABIE41_RS00940 at 179.610 kb on - strand, within ABIE41_RS00940 at 179.610 kb on - strand, within ABIE41_RS00940 at 179.726 kb on - strand, within ABIE41_RS00940 at 179.886 kb on + strand at 179.887 kb on - strand at 179.887 kb on - strand at 179.979 kb on + strand at 179.979 kb on + strand at 179.979 kb on + strand at 179.980 kb on - strand at 180.079 kb on - strand, within ABIE41_RS00945 at 180.079 kb on - strand, within ABIE41_RS00945 at 180.112 kb on - strand, within ABIE41_RS00945 at 180.112 kb on - strand, within ABIE41_RS00945 at 180.171 kb on + strand, within ABIE41_RS00945 at 180.172 kb on - strand, within ABIE41_RS00945 at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.348 kb on + strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.349 kb on - strand at 180.356 kb on - strand at 180.356 kb on - strand at 180.356 kb on - strand at 180.356 kb on - strand at 180.429 kb on + strand at 180.429 kb on + strand at 180.430 kb on - strand at 180.430 kb on - strand at 180.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 178,038 + +0.8 178,039 - +0.7 178,039 - -0.4 178,286 + -0.1 178,286 + +0.5 178,287 - +0.2 178,287 - +2.5 178,332 + -1.4 178,332 + +0.3 178,332 + -0.2 178,332 + -0.6 178,332 + +0.6 178,332 + +0.9 178,333 - +0.1 178,333 - +1.5 178,333 - -0.7 178,496 + -0.2 178,496 + -1.1 178,497 - -1.0 178,760 + +0.4 178,760 + -0.9 178,761 - -0.9 178,761 - -0.6 178,761 - -0.5 178,761 - -1.5 178,761 - -1.9 178,773 + -0.5 178,773 + +1.0 178,774 - -0.8 178,774 - -0.1 178,774 - +0.5 178,775 + -0.1 178,828 + -0.3 178,828 + +0.6 178,828 + +1.4 178,828 + -1.2 178,829 - -0.3 178,829 - +0.0 178,999 + ABIE41_RS00935 0.19 +1.1 178,999 + ABIE41_RS00935 0.19 -1.2 178,999 + ABIE41_RS00935 0.19 -0.4 178,999 + ABIE41_RS00935 0.19 -1.1 179,000 - ABIE41_RS00935 0.19 -0.4 179,000 - ABIE41_RS00935 0.19 +0.9 179,000 - ABIE41_RS00935 0.19 +0.6 179,000 - ABIE41_RS00935 0.19 +0.6 179,000 - ABIE41_RS00935 0.19 +1.4 179,000 - ABIE41_RS00935 0.19 -0.8 179,062 + ABIE41_RS00935 0.31 -0.2 179,063 - ABIE41_RS00935 0.31 -0.0 179,063 - ABIE41_RS00935 0.31 +0.9 179,266 + ABIE41_RS00935 0.69 -0.0 179,268 + ABIE41_RS00935 0.69 -1.1 179,269 - ABIE41_RS00935 0.69 -1.6 179,269 - ABIE41_RS00935 0.69 +2.0 179,269 - ABIE41_RS00935 0.69 -0.3 179,302 + ABIE41_RS00935 0.75 -1.0 179,303 - ABIE41_RS00935 0.75 -0.8 179,382 - -0.5 179,414 - -0.2 179,414 - +0.2 179,426 + -1.6 179,426 + +2.2 179,448 - -1.5 179,448 - +0.2 179,448 - -1.1 179,555 + ABIE41_RS00940 0.22 -0.5 179,572 + ABIE41_RS00940 0.26 -2.4 179,573 - ABIE41_RS00940 0.26 -1.5 179,573 - ABIE41_RS00940 0.26 -2.7 179,573 - ABIE41_RS00940 0.26 +0.5 179,573 - ABIE41_RS00940 0.26 -2.7 179,573 - ABIE41_RS00940 0.26 -1.1 179,573 - ABIE41_RS00940 0.26 -1.5 179,609 + ABIE41_RS00940 0.34 +0.4 179,609 + ABIE41_RS00940 0.34 -0.1 179,609 + ABIE41_RS00940 0.34 -0.2 179,609 + ABIE41_RS00940 0.34 +0.5 179,610 - ABIE41_RS00940 0.34 -1.4 179,610 - ABIE41_RS00940 0.34 +0.7 179,726 - ABIE41_RS00940 0.58 +0.4 179,886 + +1.6 179,887 - +0.1 179,887 - +0.0 179,979 + -0.1 179,979 + +2.8 179,979 + +1.0 179,980 - +0.1 180,079 - ABIE41_RS00945 0.11 -0.0 180,079 - ABIE41_RS00945 0.11 +0.6 180,112 - ABIE41_RS00945 0.22 -1.9 180,112 - ABIE41_RS00945 0.22 -1.2 180,171 + ABIE41_RS00945 0.41 +0.2 180,172 - ABIE41_RS00945 0.42 +0.5 180,348 + -1.1 180,348 + +0.4 180,348 + +0.2 180,348 + -1.4 180,348 + -2.4 180,348 + -0.5 180,348 + -0.1 180,348 + -0.1 180,348 + +0.2 180,348 + +0.3 180,348 + -0.4 180,348 + +0.7 180,348 + -0.2 180,348 + +0.4 180,348 + +1.7 180,348 + +0.7 180,348 + -0.8 180,348 + -3.5 180,349 - +2.0 180,349 - +0.2 180,349 - -0.5 180,349 - +0.8 180,349 - -0.1 180,349 - -0.1 180,349 - +0.4 180,349 - +0.2 180,349 - +0.1 180,349 - -0.3 180,349 - -0.8 180,349 - +0.0 180,349 - -0.0 180,349 - +0.2 180,349 - -0.1 180,349 - +0.6 180,349 - -0.4 180,349 - -0.2 180,349 - -0.2 180,349 - -1.8 180,349 - -0.9 180,349 - +0.3 180,349 - -0.2 180,349 - +0.1 180,356 - -0.9 180,356 - -2.0 180,356 - +1.1 180,356 - -0.9 180,429 + -1.4 180,429 + +0.5 180,430 - -0.2 180,430 - +0.2 180,430 - -0.8
Or see this region's nucleotide sequence