Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24955

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS24945 and ABIE40_RS24950 are separated by 63 nucleotidesABIE40_RS24950 and ABIE40_RS24955 are separated by 133 nucleotidesABIE40_RS24955 and ABIE40_RS24960 are separated by 247 nucleotides ABIE40_RS24945: ABIE40_RS24945 - FAD-binding oxidoreductase, at 1,157,746 to 1,158,999 _RS24945 ABIE40_RS24950: ABIE40_RS24950 - ABC transporter substrate-binding protein, at 1,159,063 to 1,159,818 _RS24950 ABIE40_RS24955: ABIE40_RS24955 - phosphatase PAP2 family protein, at 1,159,952 to 1,160,707 _RS24955 ABIE40_RS24960: ABIE40_RS24960 - hypothetical protein, at 1,160,955 to 1,161,731 _RS24960 Position (kb) 1159 1160 1161Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1159.067 kb on + strandat 1159.068 kb on - strandat 1159.068 kb on - strandat 1159.068 kb on - strandat 1159.068 kb on - strandat 1159.068 kb on - strandat 1159.068 kb on - strandat 1159.085 kb on + strandat 1159.106 kb on + strandat 1159.107 kb on - strandat 1159.340 kb on - strand, within ABIE40_RS24950at 1159.370 kb on + strand, within ABIE40_RS24950at 1159.370 kb on + strand, within ABIE40_RS24950at 1159.371 kb on - strand, within ABIE40_RS24950at 1159.371 kb on - strand, within ABIE40_RS24950at 1159.371 kb on - strand, within ABIE40_RS24950at 1159.376 kb on - strand, within ABIE40_RS24950at 1159.386 kb on - strand, within ABIE40_RS24950at 1159.497 kb on + strand, within ABIE40_RS24950at 1159.497 kb on + strand, within ABIE40_RS24950at 1159.497 kb on + strand, within ABIE40_RS24950at 1159.498 kb on - strand, within ABIE40_RS24950at 1159.498 kb on - strand, within ABIE40_RS24950at 1159.499 kb on + strand, within ABIE40_RS24950at 1159.500 kb on - strand, within ABIE40_RS24950at 1159.502 kb on + strand, within ABIE40_RS24950at 1159.502 kb on + strand, within ABIE40_RS24950at 1159.503 kb on - strand, within ABIE40_RS24950at 1159.503 kb on - strand, within ABIE40_RS24950at 1159.503 kb on - strand, within ABIE40_RS24950at 1159.503 kb on - strand, within ABIE40_RS24950at 1159.503 kb on - strand, within ABIE40_RS24950at 1159.503 kb on - strand, within ABIE40_RS24950at 1159.571 kb on + strand, within ABIE40_RS24950at 1159.706 kb on + strand, within ABIE40_RS24950at 1159.706 kb on + strand, within ABIE40_RS24950at 1159.706 kb on + strand, within ABIE40_RS24950at 1159.706 kb on + strand, within ABIE40_RS24950at 1159.707 kb on - strand, within ABIE40_RS24950at 1159.707 kb on - strand, within ABIE40_RS24950at 1159.707 kb on - strand, within ABIE40_RS24950at 1159.855 kb on + strandat 1159.856 kb on - strandat 1159.947 kb on + strandat 1159.947 kb on + strandat 1159.947 kb on + strandat 1159.947 kb on + strandat 1159.947 kb on + strandat 1159.947 kb on + strandat 1159.948 kb on - strandat 1159.948 kb on - strandat 1159.948 kb on - strandat 1159.948 kb on - strandat 1160.050 kb on - strand, within ABIE40_RS24955at 1160.050 kb on - strand, within ABIE40_RS24955at 1160.115 kb on - strand, within ABIE40_RS24955at 1160.115 kb on - strand, within ABIE40_RS24955at 1160.156 kb on + strand, within ABIE40_RS24955at 1160.157 kb on - strand, within ABIE40_RS24955at 1160.157 kb on - strand, within ABIE40_RS24955at 1160.354 kb on + strand, within ABIE40_RS24955at 1160.355 kb on - strand, within ABIE40_RS24955at 1160.370 kb on - strand, within ABIE40_RS24955at 1160.457 kb on + strand, within ABIE40_RS24955at 1160.458 kb on - strand, within ABIE40_RS24955at 1160.458 kb on - strand, within ABIE40_RS24955at 1160.458 kb on - strand, within ABIE40_RS24955at 1160.603 kb on + strand, within ABIE40_RS24955at 1160.655 kb on + strandat 1160.655 kb on + strandat 1160.655 kb on + strandat 1160.656 kb on - strandat 1160.656 kb on - strandat 1160.681 kb on + strandat 1160.681 kb on + strandat 1160.681 kb on + strandat 1160.681 kb on + strandat 1160.681 kb on + strandat 1160.681 kb on + strandat 1160.681 kb on + strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.682 kb on - strandat 1160.729 kb on + strandat 1160.779 kb on - strandat 1160.827 kb on + strandat 1160.827 kb on + strandat 1160.828 kb on - strandat 1160.828 kb on - strandat 1160.828 kb on - strandat 1161.004 kb on + strandat 1161.004 kb on + strandat 1161.005 kb on - strandat 1161.005 kb on - strandat 1161.049 kb on + strand, within ABIE40_RS24960at 1161.050 kb on - strand, within ABIE40_RS24960at 1161.050 kb on - strand, within ABIE40_RS24960at 1161.050 kb on - strand, within ABIE40_RS24960at 1161.077 kb on - strand, within ABIE40_RS24960at 1161.093 kb on + strand, within ABIE40_RS24960at 1161.093 kb on + strand, within ABIE40_RS24960at 1161.134 kb on + strand, within ABIE40_RS24960at 1161.134 kb on + strand, within ABIE40_RS24960at 1161.134 kb on + strand, within ABIE40_RS24960at 1161.134 kb on + strand, within ABIE40_RS24960at 1161.134 kb on + strand, within ABIE40_RS24960at 1161.134 kb on + strand, within ABIE40_RS24960at 1161.134 kb on + strand, within ABIE40_RS24960at 1161.135 kb on - strand, within ABIE40_RS24960at 1161.135 kb on - strand, within ABIE40_RS24960at 1161.135 kb on - strand, within ABIE40_RS24960at 1161.135 kb on - strand, within ABIE40_RS24960at 1161.135 kb on - strand, within ABIE40_RS24960at 1161.135 kb on - strand, within ABIE40_RS24960at 1161.135 kb on - strand, within ABIE40_RS24960at 1161.136 kb on + strand, within ABIE40_RS24960at 1161.136 kb on + strand, within ABIE40_RS24960at 1161.136 kb on + strand, within ABIE40_RS24960at 1161.136 kb on + strand, within ABIE40_RS24960at 1161.136 kb on + strand, within ABIE40_RS24960at 1161.136 kb on + strand, within ABIE40_RS24960at 1161.137 kb on - strand, within ABIE40_RS24960at 1161.137 kb on - strand, within ABIE40_RS24960at 1161.137 kb on - strand, within ABIE40_RS24960at 1161.137 kb on - strand, within ABIE40_RS24960at 1161.137 kb on - strand, within ABIE40_RS24960at 1161.313 kb on + strand, within ABIE40_RS24960at 1161.313 kb on + strand, within ABIE40_RS24960at 1161.314 kb on - strand, within ABIE40_RS24960at 1161.314 kb on - strand, within ABIE40_RS24960at 1161.314 kb on - strand, within ABIE40_RS24960at 1161.314 kb on - strand, within ABIE40_RS24960at 1161.314 kb on - strand, within ABIE40_RS24960at 1161.314 kb on - strand, within ABIE40_RS24960at 1161.488 kb on + strand, within ABIE40_RS24960at 1161.488 kb on + strand, within ABIE40_RS24960at 1161.508 kb on + strand, within ABIE40_RS24960at 1161.523 kb on + strand, within ABIE40_RS24960at 1161.524 kb on - strand, within ABIE40_RS24960at 1161.524 kb on - strand, within ABIE40_RS24960at 1161.524 kb on - strand, within ABIE40_RS24960

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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1,159,067 + -0.2
1,159,068 - -0.8
1,159,068 - -0.6
1,159,068 - -0.9
1,159,068 - +0.2
1,159,068 - -0.7
1,159,068 - +0.1
1,159,085 + -0.9
1,159,106 + -0.2
1,159,107 - +0.0
1,159,340 - ABIE40_RS24950 0.37 -0.3
1,159,370 + ABIE40_RS24950 0.41 -0.2
1,159,370 + ABIE40_RS24950 0.41 +0.8
1,159,371 - ABIE40_RS24950 0.41 +0.1
1,159,371 - ABIE40_RS24950 0.41 +0.5
1,159,371 - ABIE40_RS24950 0.41 +0.3
1,159,376 - ABIE40_RS24950 0.41 +0.1
1,159,386 - ABIE40_RS24950 0.43 -0.4
1,159,497 + ABIE40_RS24950 0.57 +1.9
1,159,497 + ABIE40_RS24950 0.57 -2.2
1,159,497 + ABIE40_RS24950 0.57 +2.1
1,159,498 - ABIE40_RS24950 0.58 +0.7
1,159,498 - ABIE40_RS24950 0.58 +0.3
1,159,499 + ABIE40_RS24950 0.58 -0.1
1,159,500 - ABIE40_RS24950 0.58 +0.9
1,159,502 + ABIE40_RS24950 0.58 -0.8
1,159,502 + ABIE40_RS24950 0.58 -0.6
1,159,503 - ABIE40_RS24950 0.58 +0.7
1,159,503 - ABIE40_RS24950 0.58 +0.0
1,159,503 - ABIE40_RS24950 0.58 +1.5
1,159,503 - ABIE40_RS24950 0.58 -1.3
1,159,503 - ABIE40_RS24950 0.58 -0.0
1,159,503 - ABIE40_RS24950 0.58 -0.2
1,159,571 + ABIE40_RS24950 0.67 -0.5
1,159,706 + ABIE40_RS24950 0.85 +0.2
1,159,706 + ABIE40_RS24950 0.85 -0.8
1,159,706 + ABIE40_RS24950 0.85 +0.2
1,159,706 + ABIE40_RS24950 0.85 -1.7
1,159,707 - ABIE40_RS24950 0.85 -0.8
1,159,707 - ABIE40_RS24950 0.85 -0.9
1,159,707 - ABIE40_RS24950 0.85 -0.5
1,159,855 + -0.6
1,159,856 - -1.0
1,159,947 + +0.4
1,159,947 + -0.1
1,159,947 + +1.7
1,159,947 + -1.0
1,159,947 + -3.0
1,159,947 + -1.6
1,159,948 - -1.2
1,159,948 - -1.3
1,159,948 - -1.3
1,159,948 - +0.4
1,160,050 - ABIE40_RS24955 0.13 -0.6
1,160,050 - ABIE40_RS24955 0.13 -0.2
1,160,115 - ABIE40_RS24955 0.22 +0.3
1,160,115 - ABIE40_RS24955 0.22 -1.2
1,160,156 + ABIE40_RS24955 0.27 -1.1
1,160,157 - ABIE40_RS24955 0.27 +1.0
1,160,157 - ABIE40_RS24955 0.27 +0.9
1,160,354 + ABIE40_RS24955 0.53 -1.6
1,160,355 - ABIE40_RS24955 0.53 -1.0
1,160,370 - ABIE40_RS24955 0.55 -0.1
1,160,457 + ABIE40_RS24955 0.67 -0.3
1,160,458 - ABIE40_RS24955 0.67 -1.3
1,160,458 - ABIE40_RS24955 0.67 -1.2
1,160,458 - ABIE40_RS24955 0.67 -2.0
1,160,603 + ABIE40_RS24955 0.86 +0.7
1,160,655 + +0.0
1,160,655 + -2.3
1,160,655 + +0.3
1,160,656 - +0.7
1,160,656 - -1.7
1,160,681 + -0.5
1,160,681 + +1.1
1,160,681 + -0.1
1,160,681 + +0.6
1,160,681 + -0.2
1,160,681 + -0.4
1,160,681 + -0.2
1,160,682 - -0.1
1,160,682 - +0.2
1,160,682 - +0.1
1,160,682 - -0.7
1,160,682 - -0.6
1,160,682 - -0.6
1,160,682 - -1.0
1,160,682 - -1.3
1,160,682 - +1.5
1,160,682 - -1.0
1,160,682 - +0.2
1,160,729 + -1.1
1,160,779 - +0.1
1,160,827 + +0.6
1,160,827 + -0.7
1,160,828 - +0.5
1,160,828 - -1.2
1,160,828 - -1.1
1,161,004 + -1.3
1,161,004 + -0.1
1,161,005 - +0.7
1,161,005 - +2.5
1,161,049 + ABIE40_RS24960 0.12 -0.1
1,161,050 - ABIE40_RS24960 0.12 +0.2
1,161,050 - ABIE40_RS24960 0.12 -0.6
1,161,050 - ABIE40_RS24960 0.12 +0.6
1,161,077 - ABIE40_RS24960 0.16 +0.4
1,161,093 + ABIE40_RS24960 0.18 -0.5
1,161,093 + ABIE40_RS24960 0.18 +0.9
1,161,134 + ABIE40_RS24960 0.23 -0.8
1,161,134 + ABIE40_RS24960 0.23 -1.5
1,161,134 + ABIE40_RS24960 0.23 +0.2
1,161,134 + ABIE40_RS24960 0.23 +2.6
1,161,134 + ABIE40_RS24960 0.23 -0.0
1,161,134 + ABIE40_RS24960 0.23 +0.6
1,161,134 + ABIE40_RS24960 0.23 +0.3
1,161,135 - ABIE40_RS24960 0.23 -0.2
1,161,135 - ABIE40_RS24960 0.23 +0.1
1,161,135 - ABIE40_RS24960 0.23 +0.2
1,161,135 - ABIE40_RS24960 0.23 -0.5
1,161,135 - ABIE40_RS24960 0.23 +0.4
1,161,135 - ABIE40_RS24960 0.23 +1.1
1,161,135 - ABIE40_RS24960 0.23 -0.6
1,161,136 + ABIE40_RS24960 0.23 +0.0
1,161,136 + ABIE40_RS24960 0.23 +1.2
1,161,136 + ABIE40_RS24960 0.23 -1.0
1,161,136 + ABIE40_RS24960 0.23 -1.0
1,161,136 + ABIE40_RS24960 0.23 +0.7
1,161,136 + ABIE40_RS24960 0.23 +0.5
1,161,137 - ABIE40_RS24960 0.23 +0.1
1,161,137 - ABIE40_RS24960 0.23 -0.1
1,161,137 - ABIE40_RS24960 0.23 -0.6
1,161,137 - ABIE40_RS24960 0.23 +0.2
1,161,137 - ABIE40_RS24960 0.23 +1.5
1,161,313 + ABIE40_RS24960 0.46 +0.0
1,161,313 + ABIE40_RS24960 0.46 +0.1
1,161,314 - ABIE40_RS24960 0.46 +0.4
1,161,314 - ABIE40_RS24960 0.46 -0.9
1,161,314 - ABIE40_RS24960 0.46 -0.1
1,161,314 - ABIE40_RS24960 0.46 -0.6
1,161,314 - ABIE40_RS24960 0.46 +0.0
1,161,314 - ABIE40_RS24960 0.46 +1.3
1,161,488 + ABIE40_RS24960 0.69 -1.3
1,161,488 + ABIE40_RS24960 0.69 +0.7
1,161,508 + ABIE40_RS24960 0.71 -0.3
1,161,523 + ABIE40_RS24960 0.73 +1.3
1,161,524 - ABIE40_RS24960 0.73 +0.1
1,161,524 - ABIE40_RS24960 0.73 +0.0
1,161,524 - ABIE40_RS24960 0.73 -1.0

Or see this region's nucleotide sequence