Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20640 and ABIE40_RS20645 overlap by 4 nucleotides ABIE40_RS20645 and ABIE40_RS20650 are separated by 196 nucleotides ABIE40_RS20650 and ABIE40_RS20655 are separated by 237 nucleotides
ABIE40_RS20640: ABIE40_RS20640 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 234,717 to 235,553
_RS20640
ABIE40_RS20645: ABIE40_RS20645 - GntR family transcriptional regulator, at 235,550 to 236,320
_RS20645
ABIE40_RS20650: ABIE40_RS20650 - DUF5054 domain-containing protein, at 236,517 to 238,430
_RS20650
ABIE40_RS20655: ABIE40_RS20655 - substrate-binding domain-containing protein, at 238,668 to 239,681
_RS20655
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 235.544 kb on - strand at 235.611 kb on + strand at 235.611 kb on + strand at 235.846 kb on + strand, within ABIE40_RS20645 at 235.847 kb on - strand, within ABIE40_RS20645 at 235.997 kb on - strand, within ABIE40_RS20645 at 235.997 kb on - strand, within ABIE40_RS20645 at 236.229 kb on + strand, within ABIE40_RS20645 at 236.230 kb on - strand, within ABIE40_RS20645 at 236.349 kb on + strand at 236.349 kb on + strand at 236.408 kb on + strand at 236.501 kb on - strand at 236.684 kb on + strand at 236.880 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.100 kb on + strand, within ABIE40_RS20650 at 237.101 kb on - strand, within ABIE40_RS20650 at 237.101 kb on - strand, within ABIE40_RS20650 at 237.101 kb on - strand, within ABIE40_RS20650 at 237.110 kb on + strand, within ABIE40_RS20650 at 237.110 kb on + strand, within ABIE40_RS20650 at 237.110 kb on + strand, within ABIE40_RS20650 at 237.110 kb on + strand, within ABIE40_RS20650 at 237.110 kb on + strand, within ABIE40_RS20650 at 237.111 kb on - strand, within ABIE40_RS20650 at 237.111 kb on - strand, within ABIE40_RS20650 at 237.111 kb on - strand, within ABIE40_RS20650 at 237.111 kb on - strand, within ABIE40_RS20650 at 237.111 kb on - strand, within ABIE40_RS20650 at 237.136 kb on + strand, within ABIE40_RS20650 at 237.137 kb on - strand, within ABIE40_RS20650 at 237.137 kb on - strand, within ABIE40_RS20650 at 237.137 kb on - strand, within ABIE40_RS20650 at 237.137 kb on - strand, within ABIE40_RS20650 at 237.137 kb on - strand, within ABIE40_RS20650 at 237.137 kb on - strand, within ABIE40_RS20650 at 237.152 kb on - strand, within ABIE40_RS20650 at 237.215 kb on + strand, within ABIE40_RS20650 at 237.377 kb on - strand, within ABIE40_RS20650 at 237.409 kb on + strand, within ABIE40_RS20650 at 237.482 kb on - strand, within ABIE40_RS20650 at 237.594 kb on + strand, within ABIE40_RS20650 at 237.809 kb on + strand, within ABIE40_RS20650 at 237.809 kb on + strand, within ABIE40_RS20650 at 237.822 kb on - strand, within ABIE40_RS20650 at 237.886 kb on + strand, within ABIE40_RS20650 at 237.886 kb on + strand, within ABIE40_RS20650 at 237.886 kb on + strand, within ABIE40_RS20650 at 237.886 kb on + strand, within ABIE40_RS20650 at 237.886 kb on + strand, within ABIE40_RS20650 at 237.886 kb on + strand, within ABIE40_RS20650 at 237.886 kb on + strand, within ABIE40_RS20650 at 237.887 kb on - strand, within ABIE40_RS20650 at 237.887 kb on - strand, within ABIE40_RS20650 at 237.887 kb on - strand, within ABIE40_RS20650 at 237.887 kb on - strand, within ABIE40_RS20650 at 238.096 kb on + strand, within ABIE40_RS20650 at 238.097 kb on - strand, within ABIE40_RS20650 at 238.140 kb on - strand, within ABIE40_RS20650 at 238.140 kb on - strand, within ABIE40_RS20650 at 238.345 kb on + strand at 238.346 kb on - strand at 238.433 kb on - strand at 238.480 kb on + strand at 238.481 kb on - strand at 238.574 kb on + strand at 238.574 kb on + strand at 238.574 kb on + strand at 238.574 kb on + strand at 238.574 kb on + strand at 238.574 kb on + strand at 238.574 kb on + strand at 238.575 kb on - strand at 238.575 kb on - strand at 238.575 kb on - strand at 238.604 kb on + strand at 238.613 kb on + strand at 238.613 kb on + strand at 238.614 kb on - strand at 238.614 kb on - strand at 238.822 kb on + strand, within ABIE40_RS20655 at 238.822 kb on + strand, within ABIE40_RS20655 at 238.823 kb on - strand, within ABIE40_RS20655 at 238.823 kb on - strand, within ABIE40_RS20655 at 238.823 kb on - strand, within ABIE40_RS20655 at 239.012 kb on - strand, within ABIE40_RS20655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 235,544 - +0.2 235,611 + -0.6 235,611 + -0.4 235,846 + ABIE40_RS20645 0.38 -0.3 235,847 - ABIE40_RS20645 0.39 +0.0 235,997 - ABIE40_RS20645 0.58 -3.3 235,997 - ABIE40_RS20645 0.58 -1.2 236,229 + ABIE40_RS20645 0.88 +3.9 236,230 - ABIE40_RS20645 0.88 +1.5 236,349 + -0.2 236,349 + -0.4 236,408 + +2.4 236,501 - +0.4 236,684 + +0.5 236,880 + ABIE40_RS20650 0.19 +0.4 237,100 + ABIE40_RS20650 0.30 +1.6 237,100 + ABIE40_RS20650 0.30 -1.9 237,100 + ABIE40_RS20650 0.30 -0.3 237,100 + ABIE40_RS20650 0.30 -1.6 237,100 + ABIE40_RS20650 0.30 -0.0 237,100 + ABIE40_RS20650 0.30 +0.6 237,100 + ABIE40_RS20650 0.30 +0.0 237,100 + ABIE40_RS20650 0.30 -1.7 237,101 - ABIE40_RS20650 0.31 -0.7 237,101 - ABIE40_RS20650 0.31 +0.9 237,101 - ABIE40_RS20650 0.31 -0.7 237,110 + ABIE40_RS20650 0.31 -0.1 237,110 + ABIE40_RS20650 0.31 -0.6 237,110 + ABIE40_RS20650 0.31 +0.1 237,110 + ABIE40_RS20650 0.31 -0.8 237,110 + ABIE40_RS20650 0.31 -1.2 237,111 - ABIE40_RS20650 0.31 -1.4 237,111 - ABIE40_RS20650 0.31 -0.0 237,111 - ABIE40_RS20650 0.31 -0.3 237,111 - ABIE40_RS20650 0.31 -0.6 237,111 - ABIE40_RS20650 0.31 -1.2 237,136 + ABIE40_RS20650 0.32 -0.3 237,137 - ABIE40_RS20650 0.32 +0.5 237,137 - ABIE40_RS20650 0.32 -0.0 237,137 - ABIE40_RS20650 0.32 -0.9 237,137 - ABIE40_RS20650 0.32 -1.8 237,137 - ABIE40_RS20650 0.32 -1.4 237,137 - ABIE40_RS20650 0.32 +0.3 237,152 - ABIE40_RS20650 0.33 -0.1 237,215 + ABIE40_RS20650 0.36 +0.5 237,377 - ABIE40_RS20650 0.45 +1.3 237,409 + ABIE40_RS20650 0.47 -1.0 237,482 - ABIE40_RS20650 0.50 +0.5 237,594 + ABIE40_RS20650 0.56 -0.1 237,809 + ABIE40_RS20650 0.68 -0.8 237,809 + ABIE40_RS20650 0.68 -0.3 237,822 - ABIE40_RS20650 0.68 -0.1 237,886 + ABIE40_RS20650 0.72 -0.2 237,886 + ABIE40_RS20650 0.72 -0.7 237,886 + ABIE40_RS20650 0.72 +0.1 237,886 + ABIE40_RS20650 0.72 -1.3 237,886 + ABIE40_RS20650 0.72 -0.3 237,886 + ABIE40_RS20650 0.72 -0.0 237,886 + ABIE40_RS20650 0.72 +0.4 237,887 - ABIE40_RS20650 0.72 -0.4 237,887 - ABIE40_RS20650 0.72 -1.0 237,887 - ABIE40_RS20650 0.72 -1.5 237,887 - ABIE40_RS20650 0.72 -1.3 238,096 + ABIE40_RS20650 0.82 +0.7 238,097 - ABIE40_RS20650 0.83 +1.2 238,140 - ABIE40_RS20650 0.85 +1.0 238,140 - ABIE40_RS20650 0.85 +0.6 238,345 + -1.0 238,346 - +0.2 238,433 - +0.3 238,480 + -0.1 238,481 - -0.1 238,574 + -0.7 238,574 + +1.2 238,574 + +0.6 238,574 + -0.9 238,574 + +0.7 238,574 + -0.4 238,574 + -0.3 238,575 - +0.1 238,575 - -1.1 238,575 - +1.8 238,604 + +0.3 238,613 + -2.3 238,613 + -0.7 238,614 - +1.3 238,614 - +1.3 238,822 + ABIE40_RS20655 0.15 -0.8 238,822 + ABIE40_RS20655 0.15 -1.1 238,823 - ABIE40_RS20655 0.15 -1.0 238,823 - ABIE40_RS20655 0.15 -1.3 238,823 - ABIE40_RS20655 0.15 -0.0 239,012 - ABIE40_RS20655 0.34 -0.7
Or see this region's nucleotide sequence