Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20630

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20620 and ABIE40_RS20625 overlap by 17 nucleotidesABIE40_RS20625 and ABIE40_RS20630 are separated by 7 nucleotidesABIE40_RS20630 and ABIE40_RS20635 are separated by 40 nucleotidesABIE40_RS20635 and ABIE40_RS20640 are separated by 4 nucleotides ABIE40_RS20620: ABIE40_RS20620 - amino acid ABC transporter ATP-binding protein, at 231,860 to 232,588 _RS20620 ABIE40_RS20625: ABIE40_RS20625 - amino acid ABC transporter permease, at 232,572 to 233,225 _RS20625 ABIE40_RS20630: ABIE40_RS20630 - amino acid ABC transporter permease, at 233,233 to 233,916 _RS20630 ABIE40_RS20635: ABIE40_RS20635 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 233,957 to 234,712 _RS20635 ABIE40_RS20640: ABIE40_RS20640 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 234,717 to 235,553 _RS20640 Position (kb) 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.323 kb on + strand, within ABIE40_RS20620at 232.324 kb on - strand, within ABIE40_RS20620at 232.324 kb on - strand, within ABIE40_RS20620at 232.324 kb on - strand, within ABIE40_RS20620at 232.574 kb on - strandat 232.645 kb on + strand, within ABIE40_RS20625at 232.645 kb on + strand, within ABIE40_RS20625at 232.646 kb on - strand, within ABIE40_RS20625at 232.646 kb on - strand, within ABIE40_RS20625at 232.737 kb on + strand, within ABIE40_RS20625at 232.737 kb on + strand, within ABIE40_RS20625at 232.737 kb on + strand, within ABIE40_RS20625at 232.737 kb on + strand, within ABIE40_RS20625at 232.738 kb on - strand, within ABIE40_RS20625at 232.738 kb on - strand, within ABIE40_RS20625at 232.927 kb on + strand, within ABIE40_RS20625at 232.927 kb on + strand, within ABIE40_RS20625at 232.927 kb on + strand, within ABIE40_RS20625at 232.928 kb on - strand, within ABIE40_RS20625at 232.928 kb on - strand, within ABIE40_RS20625at 232.928 kb on - strand, within ABIE40_RS20625at 232.939 kb on + strand, within ABIE40_RS20625at 232.940 kb on - strand, within ABIE40_RS20625at 232.940 kb on - strand, within ABIE40_RS20625at 233.008 kb on + strand, within ABIE40_RS20625at 233.009 kb on - strand, within ABIE40_RS20625at 233.009 kb on - strand, within ABIE40_RS20625at 233.059 kb on + strand, within ABIE40_RS20625at 233.059 kb on + strand, within ABIE40_RS20625at 233.060 kb on - strand, within ABIE40_RS20625at 233.060 kb on - strand, within ABIE40_RS20625at 233.060 kb on - strand, within ABIE40_RS20625at 233.191 kb on + strandat 233.191 kb on + strandat 233.192 kb on - strandat 233.192 kb on - strandat 233.309 kb on + strand, within ABIE40_RS20630at 233.309 kb on + strand, within ABIE40_RS20630at 233.310 kb on - strand, within ABIE40_RS20630at 233.310 kb on - strand, within ABIE40_RS20630at 233.310 kb on - strand, within ABIE40_RS20630at 233.310 kb on - strand, within ABIE40_RS20630at 233.324 kb on + strand, within ABIE40_RS20630at 233.324 kb on + strand, within ABIE40_RS20630at 233.324 kb on + strand, within ABIE40_RS20630at 233.324 kb on + strand, within ABIE40_RS20630at 233.324 kb on + strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.325 kb on - strand, within ABIE40_RS20630at 233.474 kb on + strand, within ABIE40_RS20630at 233.474 kb on + strand, within ABIE40_RS20630at 233.514 kb on - strand, within ABIE40_RS20630at 233.514 kb on - strand, within ABIE40_RS20630at 233.604 kb on + strand, within ABIE40_RS20630at 233.605 kb on - strand, within ABIE40_RS20630at 233.605 kb on - strand, within ABIE40_RS20630at 233.736 kb on + strand, within ABIE40_RS20630at 233.737 kb on - strand, within ABIE40_RS20630at 233.737 kb on - strand, within ABIE40_RS20630at 233.738 kb on + strand, within ABIE40_RS20630at 233.738 kb on + strand, within ABIE40_RS20630at 233.738 kb on + strand, within ABIE40_RS20630at 233.739 kb on - strand, within ABIE40_RS20630at 233.739 kb on - strand, within ABIE40_RS20630at 233.909 kb on + strandat 233.909 kb on + strandat 233.909 kb on + strandat 233.909 kb on + strandat 233.910 kb on - strandat 233.916 kb on + strandat 233.916 kb on + strandat 233.916 kb on + strandat 233.916 kb on + strandat 233.916 kb on + strandat 233.916 kb on + strandat 233.916 kb on + strandat 233.916 kb on + strandat 233.917 kb on - strandat 233.917 kb on - strandat 233.917 kb on - strandat 233.958 kb on + strandat 233.959 kb on - strandat 234.006 kb on + strandat 234.006 kb on + strandat 234.033 kb on - strand, within ABIE40_RS20635at 234.150 kb on + strand, within ABIE40_RS20635at 234.247 kb on - strand, within ABIE40_RS20635at 234.373 kb on + strand, within ABIE40_RS20635at 234.373 kb on + strand, within ABIE40_RS20635at 234.374 kb on - strand, within ABIE40_RS20635at 234.374 kb on - strand, within ABIE40_RS20635at 234.718 kb on + strandat 234.719 kb on - strandat 234.719 kb on - strandat 234.719 kb on - strandat 234.719 kb on - strandat 234.796 kb on + strandat 234.796 kb on + strandat 234.796 kb on + strandat 234.796 kb on + strandat 234.797 kb on - strandat 234.797 kb on - strandat 234.797 kb on - strandat 234.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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232,323 + ABIE40_RS20620 0.64 +0.7
232,323 + ABIE40_RS20620 0.64 -0.2
232,323 + ABIE40_RS20620 0.64 -0.6
232,323 + ABIE40_RS20620 0.64 -0.3
232,323 + ABIE40_RS20620 0.64 +0.9
232,323 + ABIE40_RS20620 0.64 -1.2
232,323 + ABIE40_RS20620 0.64 +1.2
232,323 + ABIE40_RS20620 0.64 -0.7
232,323 + ABIE40_RS20620 0.64 +0.5
232,323 + ABIE40_RS20620 0.64 +0.3
232,324 - ABIE40_RS20620 0.64 +0.3
232,324 - ABIE40_RS20620 0.64 -0.4
232,324 - ABIE40_RS20620 0.64 +0.6
232,574 - -0.2
232,645 + ABIE40_RS20625 0.11 -0.3
232,645 + ABIE40_RS20625 0.11 -0.2
232,646 - ABIE40_RS20625 0.11 -0.5
232,646 - ABIE40_RS20625 0.11 -0.0
232,737 + ABIE40_RS20625 0.25 -0.1
232,737 + ABIE40_RS20625 0.25 -0.2
232,737 + ABIE40_RS20625 0.25 -1.6
232,737 + ABIE40_RS20625 0.25 -0.0
232,738 - ABIE40_RS20625 0.25 -0.2
232,738 - ABIE40_RS20625 0.25 -0.9
232,927 + ABIE40_RS20625 0.54 +0.8
232,927 + ABIE40_RS20625 0.54 +1.8
232,927 + ABIE40_RS20625 0.54 -0.4
232,928 - ABIE40_RS20625 0.54 -0.2
232,928 - ABIE40_RS20625 0.54 -0.2
232,928 - ABIE40_RS20625 0.54 -0.8
232,939 + ABIE40_RS20625 0.56 -0.2
232,940 - ABIE40_RS20625 0.56 +0.1
232,940 - ABIE40_RS20625 0.56 -0.9
233,008 + ABIE40_RS20625 0.67 -0.1
233,009 - ABIE40_RS20625 0.67 +0.0
233,009 - ABIE40_RS20625 0.67 -0.0
233,059 + ABIE40_RS20625 0.74 +1.7
233,059 + ABIE40_RS20625 0.74 -2.5
233,060 - ABIE40_RS20625 0.75 +0.6
233,060 - ABIE40_RS20625 0.75 -0.2
233,060 - ABIE40_RS20625 0.75 -0.4
233,191 + -1.1
233,191 + -0.0
233,192 - -0.5
233,192 - +0.1
233,309 + ABIE40_RS20630 0.11 -0.1
233,309 + ABIE40_RS20630 0.11 -0.7
233,310 - ABIE40_RS20630 0.11 +1.3
233,310 - ABIE40_RS20630 0.11 -0.7
233,310 - ABIE40_RS20630 0.11 +0.3
233,310 - ABIE40_RS20630 0.11 -0.4
233,324 + ABIE40_RS20630 0.13 +0.4
233,324 + ABIE40_RS20630 0.13 -1.2
233,324 + ABIE40_RS20630 0.13 -2.6
233,324 + ABIE40_RS20630 0.13 -0.2
233,324 + ABIE40_RS20630 0.13 -0.5
233,325 - ABIE40_RS20630 0.13 +1.0
233,325 - ABIE40_RS20630 0.13 +0.1
233,325 - ABIE40_RS20630 0.13 -0.4
233,325 - ABIE40_RS20630 0.13 +0.4
233,325 - ABIE40_RS20630 0.13 -1.0
233,325 - ABIE40_RS20630 0.13 +2.2
233,325 - ABIE40_RS20630 0.13 +2.5
233,325 - ABIE40_RS20630 0.13 +0.6
233,474 + ABIE40_RS20630 0.35 +0.2
233,474 + ABIE40_RS20630 0.35 +2.3
233,514 - ABIE40_RS20630 0.41 -0.9
233,514 - ABIE40_RS20630 0.41 -1.5
233,604 + ABIE40_RS20630 0.54 +0.2
233,605 - ABIE40_RS20630 0.54 -0.6
233,605 - ABIE40_RS20630 0.54 -1.1
233,736 + ABIE40_RS20630 0.74 +0.3
233,737 - ABIE40_RS20630 0.74 -1.6
233,737 - ABIE40_RS20630 0.74 +0.3
233,738 + ABIE40_RS20630 0.74 -0.9
233,738 + ABIE40_RS20630 0.74 -0.7
233,738 + ABIE40_RS20630 0.74 -1.3
233,739 - ABIE40_RS20630 0.74 -0.7
233,739 - ABIE40_RS20630 0.74 -2.6
233,909 + -1.4
233,909 + -2.4
233,909 + -2.5
233,909 + +0.4
233,910 - -0.3
233,916 + -0.5
233,916 + -1.4
233,916 + +0.2
233,916 + -0.7
233,916 + +0.5
233,916 + +0.1
233,916 + -2.0
233,916 + -0.0
233,917 - -0.0
233,917 - -2.7
233,917 - -1.1
233,958 + +2.6
233,959 - -1.9
234,006 + +0.0
234,006 + -0.1
234,033 - ABIE40_RS20635 0.10 -2.3
234,150 + ABIE40_RS20635 0.26 +2.3
234,247 - ABIE40_RS20635 0.38 -2.4
234,373 + ABIE40_RS20635 0.55 -1.6
234,373 + ABIE40_RS20635 0.55 -0.7
234,374 - ABIE40_RS20635 0.55 -0.9
234,374 - ABIE40_RS20635 0.55 -2.0
234,718 + +1.2
234,719 - -1.4
234,719 - -0.1
234,719 - +0.8
234,719 - -0.9
234,796 + +0.2
234,796 + -0.4
234,796 + -1.8
234,796 + +0.7
234,797 - -0.1
234,797 - +0.7
234,797 - -1.4
234,797 - +0.3

Or see this region's nucleotide sequence