Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16910

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS16900 and ABIE40_RS16905 overlap by 4 nucleotidesABIE40_RS16905 and ABIE40_RS16910 overlap by 11 nucleotidesABIE40_RS16910 and ABIE40_RS16915 are separated by 49 nucleotides ABIE40_RS16900: ABIE40_RS16900 - ABC transporter ATP-binding protein, at 3,372,642 to 3,373,625 _RS16900 ABIE40_RS16905: ABIE40_RS16905 - ABC transporter permease, at 3,373,622 to 3,374,584 _RS16905 ABIE40_RS16910: ABIE40_RS16910 - ABC transporter permease, at 3,374,574 to 3,375,389 _RS16910 ABIE40_RS16915: ABIE40_RS16915 - gamma-aminobutyraldehyde dehydrogenase, at 3,375,439 to 3,376,866 _RS16915 Position (kb) 3374 3375 3376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3373.605 kb on + strandat 3373.605 kb on + strandat 3373.605 kb on + strandat 3373.605 kb on + strandat 3373.605 kb on + strandat 3373.605 kb on + strandat 3373.606 kb on - strandat 3373.606 kb on - strandat 3373.606 kb on - strandat 3373.606 kb on - strandat 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.772 kb on + strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.773 kb on - strand, within ABIE40_RS16905at 3373.844 kb on + strand, within ABIE40_RS16905at 3373.844 kb on + strand, within ABIE40_RS16905at 3373.844 kb on + strand, within ABIE40_RS16905at 3373.865 kb on + strand, within ABIE40_RS16905at 3373.970 kb on + strand, within ABIE40_RS16905at 3373.971 kb on - strand, within ABIE40_RS16905at 3373.971 kb on - strand, within ABIE40_RS16905at 3373.973 kb on + strand, within ABIE40_RS16905at 3373.973 kb on + strand, within ABIE40_RS16905at 3373.974 kb on - strand, within ABIE40_RS16905at 3373.985 kb on + strand, within ABIE40_RS16905at 3373.985 kb on + strand, within ABIE40_RS16905at 3373.985 kb on + strand, within ABIE40_RS16905at 3373.986 kb on - strand, within ABIE40_RS16905at 3374.007 kb on + strand, within ABIE40_RS16905at 3374.007 kb on + strand, within ABIE40_RS16905at 3374.007 kb on + strand, within ABIE40_RS16905at 3374.008 kb on - strand, within ABIE40_RS16905at 3374.008 kb on - strand, within ABIE40_RS16905at 3374.008 kb on - strand, within ABIE40_RS16905at 3374.015 kb on + strand, within ABIE40_RS16905at 3374.048 kb on + strand, within ABIE40_RS16905at 3374.048 kb on + strand, within ABIE40_RS16905at 3374.049 kb on - strand, within ABIE40_RS16905at 3374.049 kb on - strand, within ABIE40_RS16905at 3374.049 kb on - strand, within ABIE40_RS16905at 3374.063 kb on + strand, within ABIE40_RS16905at 3374.063 kb on + strand, within ABIE40_RS16905at 3374.063 kb on + strand, within ABIE40_RS16905at 3374.063 kb on + strand, within ABIE40_RS16905at 3374.064 kb on - strand, within ABIE40_RS16905at 3374.064 kb on - strand, within ABIE40_RS16905at 3374.124 kb on - strand, within ABIE40_RS16905at 3374.192 kb on + strand, within ABIE40_RS16905at 3374.192 kb on + strand, within ABIE40_RS16905at 3374.219 kb on + strand, within ABIE40_RS16905at 3374.219 kb on + strand, within ABIE40_RS16905at 3374.219 kb on + strand, within ABIE40_RS16905at 3374.219 kb on + strand, within ABIE40_RS16905at 3374.219 kb on + strand, within ABIE40_RS16905at 3374.220 kb on - strand, within ABIE40_RS16905at 3374.220 kb on - strand, within ABIE40_RS16905at 3374.220 kb on - strand, within ABIE40_RS16905at 3374.220 kb on - strand, within ABIE40_RS16905at 3374.221 kb on + strand, within ABIE40_RS16905at 3374.221 kb on + strand, within ABIE40_RS16905at 3374.222 kb on - strand, within ABIE40_RS16905at 3374.234 kb on + strand, within ABIE40_RS16905at 3374.234 kb on + strand, within ABIE40_RS16905at 3374.234 kb on + strand, within ABIE40_RS16905at 3374.234 kb on + strand, within ABIE40_RS16905at 3374.235 kb on - strand, within ABIE40_RS16905at 3374.235 kb on - strand, within ABIE40_RS16905at 3374.235 kb on - strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.408 kb on + strand, within ABIE40_RS16905at 3374.409 kb on - strand, within ABIE40_RS16905at 3374.409 kb on - strand, within ABIE40_RS16905at 3374.463 kb on - strand, within ABIE40_RS16905at 3374.463 kb on - strand, within ABIE40_RS16905at 3374.464 kb on + strand, within ABIE40_RS16905at 3374.464 kb on + strand, within ABIE40_RS16905at 3374.465 kb on - strand, within ABIE40_RS16905at 3374.465 kb on - strand, within ABIE40_RS16905at 3374.465 kb on - strand, within ABIE40_RS16905at 3374.465 kb on - strand, within ABIE40_RS16905at 3374.465 kb on - strand, within ABIE40_RS16905at 3374.465 kb on - strand, within ABIE40_RS16905at 3374.540 kb on + strandat 3374.540 kb on + strandat 3374.673 kb on + strand, within ABIE40_RS16910at 3374.700 kb on + strand, within ABIE40_RS16910at 3374.701 kb on - strand, within ABIE40_RS16910at 3374.701 kb on - strand, within ABIE40_RS16910at 3374.701 kb on - strand, within ABIE40_RS16910at 3374.701 kb on - strand, within ABIE40_RS16910at 3375.027 kb on + strand, within ABIE40_RS16910at 3375.027 kb on + strand, within ABIE40_RS16910at 3375.027 kb on + strand, within ABIE40_RS16910at 3375.027 kb on + strand, within ABIE40_RS16910at 3375.027 kb on + strand, within ABIE40_RS16910at 3375.028 kb on - strand, within ABIE40_RS16910at 3375.342 kb on + strandat 3375.342 kb on + strandat 3375.342 kb on + strandat 3375.342 kb on + strandat 3375.342 kb on + strandat 3375.342 kb on + strandat 3375.342 kb on + strandat 3375.343 kb on - strandat 3375.343 kb on - strandat 3375.343 kb on - strandat 3375.345 kb on + strandat 3375.345 kb on + strandat 3375.345 kb on + strandat 3375.345 kb on + strandat 3375.345 kb on + strandat 3375.345 kb on + strandat 3375.345 kb on + strandat 3375.346 kb on - strandat 3375.346 kb on - strandat 3375.346 kb on - strandat 3375.346 kb on - strandat 3375.346 kb on - strandat 3375.387 kb on + strandat 3375.634 kb on + strand, within ABIE40_RS16915at 3375.634 kb on + strand, within ABIE40_RS16915at 3375.634 kb on + strand, within ABIE40_RS16915at 3375.635 kb on - strand, within ABIE40_RS16915at 3375.635 kb on - strand, within ABIE40_RS16915at 3375.635 kb on - strand, within ABIE40_RS16915at 3375.635 kb on - strand, within ABIE40_RS16915at 3375.635 kb on - strand, within ABIE40_RS16915at 3375.760 kb on + strand, within ABIE40_RS16915at 3375.760 kb on + strand, within ABIE40_RS16915at 3375.815 kb on - strand, within ABIE40_RS16915at 3375.815 kb on - strand, within ABIE40_RS16915at 3375.815 kb on - strand, within ABIE40_RS16915at 3375.887 kb on - strand, within ABIE40_RS16915at 3375.887 kb on - strand, within ABIE40_RS16915at 3375.887 kb on - strand, within ABIE40_RS16915at 3376.256 kb on - strand, within ABIE40_RS16915at 3376.256 kb on - strand, within ABIE40_RS16915at 3376.258 kb on + strand, within ABIE40_RS16915at 3376.258 kb on + strand, within ABIE40_RS16915at 3376.258 kb on + strand, within ABIE40_RS16915at 3376.259 kb on - strand, within ABIE40_RS16915at 3376.259 kb on - strand, within ABIE40_RS16915at 3376.259 kb on - strand, within ABIE40_RS16915at 3376.259 kb on - strand, within ABIE40_RS16915at 3376.259 kb on - strand, within ABIE40_RS16915at 3376.297 kb on + strand, within ABIE40_RS16915at 3376.297 kb on + strand, within ABIE40_RS16915at 3376.297 kb on + strand, within ABIE40_RS16915at 3376.297 kb on + strand, within ABIE40_RS16915at 3376.298 kb on - strand, within ABIE40_RS16915at 3376.298 kb on - strand, within ABIE40_RS16915at 3376.298 kb on - strand, within ABIE40_RS16915at 3376.298 kb on - strand, within ABIE40_RS16915at 3376.298 kb on - strand, within ABIE40_RS16915at 3376.298 kb on - strand, within ABIE40_RS16915at 3376.315 kb on + strand, within ABIE40_RS16915at 3376.316 kb on - strand, within ABIE40_RS16915at 3376.316 kb on - strand, within ABIE40_RS16915at 3376.316 kb on - strand, within ABIE40_RS16915at 3376.316 kb on - strand, within ABIE40_RS16915

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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3,373,605 + -0.0
3,373,605 + +0.4
3,373,605 + +0.0
3,373,605 + -0.4
3,373,605 + -0.2
3,373,605 + +0.4
3,373,606 - -1.8
3,373,606 - -0.2
3,373,606 - -0.5
3,373,606 - -0.1
3,373,772 + ABIE40_RS16905 0.16 -0.1
3,373,772 + ABIE40_RS16905 0.16 -2.1
3,373,772 + ABIE40_RS16905 0.16 +0.0
3,373,772 + ABIE40_RS16905 0.16 -1.4
3,373,772 + ABIE40_RS16905 0.16 -1.0
3,373,772 + ABIE40_RS16905 0.16 -1.9
3,373,772 + ABIE40_RS16905 0.16 -1.6
3,373,772 + ABIE40_RS16905 0.16 -0.4
3,373,772 + ABIE40_RS16905 0.16 -0.4
3,373,772 + ABIE40_RS16905 0.16 -0.8
3,373,772 + ABIE40_RS16905 0.16 +0.0
3,373,773 - ABIE40_RS16905 0.16 -0.4
3,373,773 - ABIE40_RS16905 0.16 -1.3
3,373,773 - ABIE40_RS16905 0.16 +0.5
3,373,773 - ABIE40_RS16905 0.16 -0.4
3,373,773 - ABIE40_RS16905 0.16 +1.5
3,373,773 - ABIE40_RS16905 0.16 +0.1
3,373,773 - ABIE40_RS16905 0.16 -0.4
3,373,773 - ABIE40_RS16905 0.16 +0.6
3,373,773 - ABIE40_RS16905 0.16 -1.0
3,373,844 + ABIE40_RS16905 0.23 -0.4
3,373,844 + ABIE40_RS16905 0.23 -0.1
3,373,844 + ABIE40_RS16905 0.23 -0.7
3,373,865 + ABIE40_RS16905 0.25 -0.4
3,373,970 + ABIE40_RS16905 0.36 +0.4
3,373,971 - ABIE40_RS16905 0.36 -0.2
3,373,971 - ABIE40_RS16905 0.36 +1.6
3,373,973 + ABIE40_RS16905 0.36 -0.4
3,373,973 + ABIE40_RS16905 0.36 +0.9
3,373,974 - ABIE40_RS16905 0.37 -0.8
3,373,985 + ABIE40_RS16905 0.38 -0.7
3,373,985 + ABIE40_RS16905 0.38 -0.7
3,373,985 + ABIE40_RS16905 0.38 -0.2
3,373,986 - ABIE40_RS16905 0.38 -0.0
3,374,007 + ABIE40_RS16905 0.40 -0.6
3,374,007 + ABIE40_RS16905 0.40 +0.7
3,374,007 + ABIE40_RS16905 0.40 -0.3
3,374,008 - ABIE40_RS16905 0.40 +0.0
3,374,008 - ABIE40_RS16905 0.40 +0.6
3,374,008 - ABIE40_RS16905 0.40 -0.1
3,374,015 + ABIE40_RS16905 0.41 -1.8
3,374,048 + ABIE40_RS16905 0.44 -1.8
3,374,048 + ABIE40_RS16905 0.44 +0.1
3,374,049 - ABIE40_RS16905 0.44 +0.4
3,374,049 - ABIE40_RS16905 0.44 -0.2
3,374,049 - ABIE40_RS16905 0.44 -0.8
3,374,063 + ABIE40_RS16905 0.46 -0.8
3,374,063 + ABIE40_RS16905 0.46 -0.1
3,374,063 + ABIE40_RS16905 0.46 +0.1
3,374,063 + ABIE40_RS16905 0.46 +1.1
3,374,064 - ABIE40_RS16905 0.46 -0.3
3,374,064 - ABIE40_RS16905 0.46 +0.1
3,374,124 - ABIE40_RS16905 0.52 -0.2
3,374,192 + ABIE40_RS16905 0.59 +0.4
3,374,192 + ABIE40_RS16905 0.59 +0.7
3,374,219 + ABIE40_RS16905 0.62 -1.0
3,374,219 + ABIE40_RS16905 0.62 -0.6
3,374,219 + ABIE40_RS16905 0.62 -1.0
3,374,219 + ABIE40_RS16905 0.62 +1.6
3,374,219 + ABIE40_RS16905 0.62 -1.4
3,374,220 - ABIE40_RS16905 0.62 -0.9
3,374,220 - ABIE40_RS16905 0.62 -1.1
3,374,220 - ABIE40_RS16905 0.62 -0.5
3,374,220 - ABIE40_RS16905 0.62 +0.2
3,374,221 + ABIE40_RS16905 0.62 +0.9
3,374,221 + ABIE40_RS16905 0.62 +0.1
3,374,222 - ABIE40_RS16905 0.62 +0.5
3,374,234 + ABIE40_RS16905 0.64 +0.1
3,374,234 + ABIE40_RS16905 0.64 +1.6
3,374,234 + ABIE40_RS16905 0.64 +0.6
3,374,234 + ABIE40_RS16905 0.64 +0.8
3,374,235 - ABIE40_RS16905 0.64 +0.8
3,374,235 - ABIE40_RS16905 0.64 -2.0
3,374,235 - ABIE40_RS16905 0.64 +0.1
3,374,408 + ABIE40_RS16905 0.82 +0.4
3,374,408 + ABIE40_RS16905 0.82 -2.5
3,374,408 + ABIE40_RS16905 0.82 -0.2
3,374,408 + ABIE40_RS16905 0.82 -0.4
3,374,408 + ABIE40_RS16905 0.82 -0.8
3,374,408 + ABIE40_RS16905 0.82 -0.8
3,374,408 + ABIE40_RS16905 0.82 -1.4
3,374,408 + ABIE40_RS16905 0.82 -0.1
3,374,409 - ABIE40_RS16905 0.82 -0.3
3,374,409 - ABIE40_RS16905 0.82 +0.5
3,374,463 - ABIE40_RS16905 0.87 -0.3
3,374,463 - ABIE40_RS16905 0.87 +0.1
3,374,464 + ABIE40_RS16905 0.87 -0.1
3,374,464 + ABIE40_RS16905 0.87 +0.3
3,374,465 - ABIE40_RS16905 0.88 +0.1
3,374,465 - ABIE40_RS16905 0.88 -0.8
3,374,465 - ABIE40_RS16905 0.88 +0.1
3,374,465 - ABIE40_RS16905 0.88 -0.3
3,374,465 - ABIE40_RS16905 0.88 +0.1
3,374,465 - ABIE40_RS16905 0.88 -0.2
3,374,540 + +0.0
3,374,540 + -1.4
3,374,673 + ABIE40_RS16910 0.12 -0.1
3,374,700 + ABIE40_RS16910 0.15 +0.6
3,374,701 - ABIE40_RS16910 0.16 -0.8
3,374,701 - ABIE40_RS16910 0.16 -0.0
3,374,701 - ABIE40_RS16910 0.16 +0.2
3,374,701 - ABIE40_RS16910 0.16 +2.1
3,375,027 + ABIE40_RS16910 0.56 -1.7
3,375,027 + ABIE40_RS16910 0.56 +0.3
3,375,027 + ABIE40_RS16910 0.56 +0.5
3,375,027 + ABIE40_RS16910 0.56 +0.9
3,375,027 + ABIE40_RS16910 0.56 +1.1
3,375,028 - ABIE40_RS16910 0.56 -0.6
3,375,342 + +0.9
3,375,342 + +1.0
3,375,342 + +0.2
3,375,342 + +0.0
3,375,342 + -0.7
3,375,342 + +0.4
3,375,342 + -1.0
3,375,343 - +1.1
3,375,343 - -0.2
3,375,343 - -0.2
3,375,345 + -0.4
3,375,345 + -0.0
3,375,345 + -1.4
3,375,345 + -0.6
3,375,345 + -0.3
3,375,345 + -1.0
3,375,345 + -0.5
3,375,346 - -0.1
3,375,346 - -1.3
3,375,346 - -0.0
3,375,346 - +1.0
3,375,346 - +0.8
3,375,387 + -0.2
3,375,634 + ABIE40_RS16915 0.14 +0.3
3,375,634 + ABIE40_RS16915 0.14 +0.1
3,375,634 + ABIE40_RS16915 0.14 +0.1
3,375,635 - ABIE40_RS16915 0.14 -1.4
3,375,635 - ABIE40_RS16915 0.14 -0.3
3,375,635 - ABIE40_RS16915 0.14 +0.2
3,375,635 - ABIE40_RS16915 0.14 +0.0
3,375,635 - ABIE40_RS16915 0.14 +0.4
3,375,760 + ABIE40_RS16915 0.22 -1.1
3,375,760 + ABIE40_RS16915 0.22 -1.2
3,375,815 - ABIE40_RS16915 0.26 -0.7
3,375,815 - ABIE40_RS16915 0.26 +1.6
3,375,815 - ABIE40_RS16915 0.26 +0.4
3,375,887 - ABIE40_RS16915 0.31 +1.0
3,375,887 - ABIE40_RS16915 0.31 +0.2
3,375,887 - ABIE40_RS16915 0.31 +0.0
3,376,256 - ABIE40_RS16915 0.57 -0.6
3,376,256 - ABIE40_RS16915 0.57 -0.8
3,376,258 + ABIE40_RS16915 0.57 -0.7
3,376,258 + ABIE40_RS16915 0.57 +0.4
3,376,258 + ABIE40_RS16915 0.57 +0.7
3,376,259 - ABIE40_RS16915 0.57 -1.6
3,376,259 - ABIE40_RS16915 0.57 +0.7
3,376,259 - ABIE40_RS16915 0.57 +0.8
3,376,259 - ABIE40_RS16915 0.57 -0.8
3,376,259 - ABIE40_RS16915 0.57 +0.3
3,376,297 + ABIE40_RS16915 0.60 -2.0
3,376,297 + ABIE40_RS16915 0.60 +0.4
3,376,297 + ABIE40_RS16915 0.60 +0.7
3,376,297 + ABIE40_RS16915 0.60 +1.4
3,376,298 - ABIE40_RS16915 0.60 -3.1
3,376,298 - ABIE40_RS16915 0.60 -1.4
3,376,298 - ABIE40_RS16915 0.60 -2.0
3,376,298 - ABIE40_RS16915 0.60 +2.2
3,376,298 - ABIE40_RS16915 0.60 +0.5
3,376,298 - ABIE40_RS16915 0.60 +0.5
3,376,315 + ABIE40_RS16915 0.61 +0.3
3,376,316 - ABIE40_RS16915 0.61 -0.8
3,376,316 - ABIE40_RS16915 0.61 +0.4
3,376,316 - ABIE40_RS16915 0.61 +0.6
3,376,316 - ABIE40_RS16915 0.61 -3.0

Or see this region's nucleotide sequence