Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS12190

Experiment: D-Glucuronic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic Acid (C)
2,376,000	+		ABIE40_RS12185	0.38	-0.3
2,376,000	+		ABIE40_RS12185	0.38	+0.0
2,376,000	+		ABIE40_RS12185	0.38	+0.4
2,376,001	-		ABIE40_RS12185	0.38	-0.4
2,376,001	-		ABIE40_RS12185	0.38	+0.6
2,376,004	+		ABIE40_RS12185	0.38	-1.5
2,376,004	+		ABIE40_RS12185	0.38	+1.5
2,376,004	+		ABIE40_RS12185	0.38	+0.5
2,376,004	+		ABIE40_RS12185	0.38	+1.9
2,376,005	-		ABIE40_RS12185	0.38	+1.7
2,376,005	-		ABIE40_RS12185	0.38	-0.0
2,376,061	+		ABIE40_RS12185	0.44	-0.8
2,376,061	+		ABIE40_RS12185	0.44	+0.3
2,376,091	+		ABIE40_RS12185	0.47	+1.3
2,376,091	+		ABIE40_RS12185	0.47	-0.1
2,376,131	+		ABIE40_RS12185	0.51	-0.5
2,376,131	+		ABIE40_RS12185	0.51	-0.5
2,376,132	-		ABIE40_RS12185	0.51	-0.1
2,376,132	-		ABIE40_RS12185	0.51	-0.7
2,376,132	-		ABIE40_RS12185	0.51	+1.1
2,376,132	-		ABIE40_RS12185	0.51	-0.2
2,376,132	-		ABIE40_RS12185	0.51	+0.9
2,376,257	+		ABIE40_RS12185	0.64	+0.4
2,376,257	+		ABIE40_RS12185	0.64	+0.2
2,376,257	+		ABIE40_RS12185	0.64	-0.7
2,376,257	+		ABIE40_RS12185	0.64	+0.8
2,376,258	-		ABIE40_RS12185	0.64	-0.3
2,376,258	-		ABIE40_RS12185	0.64	+1.1
2,376,258	-		ABIE40_RS12185	0.64	+0.6
2,376,258	-		ABIE40_RS12185	0.64	-0.8
2,376,258	-		ABIE40_RS12185	0.64	+0.3
2,376,258	-		ABIE40_RS12185	0.64	+1.3
2,376,305	-		ABIE40_RS12185	0.69	+2.0
2,376,305	-		ABIE40_RS12185	0.69	-0.9
2,376,305	-		ABIE40_RS12185	0.69	-0.9
2,376,483	-		ABIE40_RS12185	0.87	+0.7
2,376,561	+				+0.7
2,376,564	+				-0.1
2,376,564	+				-0.7
2,376,565	-				+0.4
2,376,676	+				+1.3
2,376,676	+				-0.3
2,376,676	+				-0.6
2,376,676	+				+0.1
2,376,676	+				-1.9
2,376,676	+				+0.1
2,376,676	+				+0.0
2,376,676	+				+0.2
2,376,676	+				-1.3
2,376,676	+				-0.7
2,376,676	+				-0.2
2,376,676	+				-2.4
2,376,676	+				+0.5
2,376,677	-				+0.5
2,376,677	-				+1.1
2,376,677	-				+1.6
2,376,677	-				-1.7
2,376,677	-				+1.8
2,376,678	+				-0.6
2,376,678	+				-0.7
2,376,678	+				-1.8
2,376,678	+				+0.9
2,376,678	+				-1.1
2,376,679	-				+0.4
2,376,679	-				+0.6
2,376,679	-				-0.0
2,376,679	-				+0.0
2,376,679	-				+0.8
2,376,679	-				-0.2
2,376,679	-				-0.7
2,376,679	-				+0.7
2,376,679	-				-2.2
2,376,679	-				-0.3
2,376,680	+				-0.1
2,376,681	-				-1.4
2,376,681	-				+0.5
2,376,754	+				+0.2
2,376,755	-				+0.4
2,376,755	-				-0.6
2,376,786	+				+0.3
2,376,786	+				-0.6
2,376,787	-				-0.3
2,376,787	-				-1.3
2,376,787	-				-0.7
2,376,787	-				+0.4
2,376,787	-				+0.2
2,376,787	-				-0.7
2,376,899	+				+1.1
2,376,899	+				+0.1
2,376,902	+				-0.2
2,376,903	-				+2.0
2,376,934	+				-2.2
2,376,934	+				-0.4
2,376,935	-				-0.4
2,376,935	-				+0.4
2,376,935	-				+0.0
2,376,935	-				+0.6
2,376,935	-				-1.6
2,376,992	+				-2.5
2,376,993	-				-2.0
2,377,091	-		ABIE40_RS12190	0.17	-0.9
2,377,213	+		ABIE40_RS12190	0.40	+0.0
2,377,213	+		ABIE40_RS12190	0.40	-0.3
2,377,214	-		ABIE40_RS12190	0.40	-0.8
2,377,219	+		ABIE40_RS12190	0.41	-0.5
2,377,219	+		ABIE40_RS12190	0.41	-1.7
2,377,219	+		ABIE40_RS12190	0.41	-1.3
2,377,220	-		ABIE40_RS12190	0.41	-0.6
2,377,220	-		ABIE40_RS12190	0.41	+0.9
2,377,267	+		ABIE40_RS12190	0.50	+0.0
2,377,342	+		ABIE40_RS12190	0.64	+1.8
2,377,343	-		ABIE40_RS12190	0.64	-1.2
2,377,343	-		ABIE40_RS12190	0.64	-0.1
2,377,343	-		ABIE40_RS12190	0.64	-0.3
2,377,356	+		ABIE40_RS12190	0.67	-0.1
2,377,356	+		ABIE40_RS12190	0.67	-0.8
2,377,356	+		ABIE40_RS12190	0.67	-1.4
2,377,356	+		ABIE40_RS12190	0.67	-1.4
2,377,356	+		ABIE40_RS12190	0.67	+1.6
2,377,357	-		ABIE40_RS12190	0.67	-0.4
2,377,357	-		ABIE40_RS12190	0.67	-0.1
2,377,363	+		ABIE40_RS12190	0.68	-1.1
2,377,363	+		ABIE40_RS12190	0.68	-0.6
2,377,363	+		ABIE40_RS12190	0.68	-0.3
2,377,363	+		ABIE40_RS12190	0.68	-0.1
2,377,363	+		ABIE40_RS12190	0.68	+1.1
2,377,364	-		ABIE40_RS12190	0.68	-0.7
2,377,364	-		ABIE40_RS12190	0.68	-1.1
2,377,364	-		ABIE40_RS12190	0.68	-1.3
2,377,364	-		ABIE40_RS12190	0.68	-0.5
2,377,407	+		ABIE40_RS12190	0.76	+0.2
2,377,407	+		ABIE40_RS12190	0.76	+0.8
2,377,407	+		ABIE40_RS12190	0.76	+0.4
2,377,407	+		ABIE40_RS12190	0.76	-0.6
2,377,408	-		ABIE40_RS12190	0.77	-0.5
2,377,408	-		ABIE40_RS12190	0.77	-1.1
2,377,408	-		ABIE40_RS12190	0.77	+1.5
2,377,498	+				+0.2
2,377,498	+				-0.9
2,377,498	+				+0.1
2,377,498	+				-0.1
2,377,499	-				+0.2
2,377,499	-				+0.2
2,377,499	-				-0.3
2,377,530	+				-1.8
2,377,530	+				+0.2
2,377,531	-				+1.0
2,377,562	+				-1.0
2,377,562	+				+0.1
2,377,562	+				-1.1
2,377,562	+				-0.7
2,377,563	-				-0.6
2,377,563	-				-0.0
2,377,563	-				+0.4
2,377,565	+				-0.3
2,377,565	+				-0.2
2,377,566	-				+0.3
2,377,581	-				+0.6
2,377,581	-				-0.1
2,377,581	-				+0.5
2,377,672	+				-0.5
2,377,705	+				-0.7
2,377,758	+		ABIE40_RS12195	0.12	+0.8
2,377,759	-		ABIE40_RS12195	0.13	+1.2
2,377,760	+		ABIE40_RS12195	0.13	+0.5
2,377,760	+		ABIE40_RS12195	0.13	-0.3
2,377,760	+		ABIE40_RS12195	0.13	-0.4
2,377,760	+		ABIE40_RS12195	0.13	+0.0
2,377,760	+		ABIE40_RS12195	0.13	-0.1
2,377,760	+		ABIE40_RS12195	0.13	-0.1
2,377,761	-		ABIE40_RS12195	0.13	+0.5
2,377,761	-		ABIE40_RS12195	0.13	+0.5
2,377,761	-		ABIE40_RS12195	0.13	+0.5
2,377,761	-		ABIE40_RS12195	0.13	-2.7
2,377,761	-		ABIE40_RS12195	0.13	-0.7
2,377,761	-		ABIE40_RS12195	0.13	+2.1
2,377,761	-		ABIE40_RS12195	0.13	+0.1
2,377,761	-		ABIE40_RS12195	0.13	-0.5
2,377,764	+		ABIE40_RS12195	0.13	-0.8
2,377,764	+		ABIE40_RS12195	0.13	-1.7
2,377,765	-		ABIE40_RS12195	0.13	+0.6
2,377,765	-		ABIE40_RS12195	0.13	-0.6
2,377,765	-		ABIE40_RS12195	0.13	-0.5
2,377,774	-		ABIE40_RS12195	0.14	+0.4
2,377,812	-		ABIE40_RS12195	0.17	+0.7
2,377,846	+		ABIE40_RS12195	0.20	-1.2
2,377,847	-		ABIE40_RS12195	0.20	+0.4
2,377,869	-		ABIE40_RS12195	0.22	+3.1
2,377,869	-		ABIE40_RS12195	0.22	+0.8
2,377,929	+		ABIE40_RS12195	0.27	+0.3
2,377,955	+		ABIE40_RS12195	0.29	-1.1
2,377,955	+		ABIE40_RS12195	0.29	+0.8
2,377,955	+		ABIE40_RS12195	0.29	+0.1
2,377,955	+		ABIE40_RS12195	0.29	-1.3
2,377,956	-		ABIE40_RS12195	0.29	-1.3
2,377,956	-		ABIE40_RS12195	0.29	+0.8
2,377,992	+		ABIE40_RS12195	0.32	-0.3
2,377,992	+		ABIE40_RS12195	0.32	-1.2
2,377,992	+		ABIE40_RS12195	0.32	-0.7
2,377,993	-		ABIE40_RS12195	0.32	+0.3
2,378,043	-		ABIE40_RS12195	0.37	-0.2
2,378,172	+		ABIE40_RS12195	0.47	-0.1
2,378,172	+		ABIE40_RS12195	0.47	-1.7
2,378,172	+		ABIE40_RS12195	0.47	-1.3
2,378,223	+		ABIE40_RS12195	0.52	-0.5
2,378,223	+		ABIE40_RS12195	0.52	+0.2
2,378,223	+		ABIE40_RS12195	0.52	-1.1
2,378,223	+		ABIE40_RS12195	0.52	+1.2
2,378,223	+		ABIE40_RS12195	0.52	-1.3
2,378,224	-		ABIE40_RS12195	0.52	-0.0
2,378,224	-		ABIE40_RS12195	0.52	-0.5
2,378,224	-		ABIE40_RS12195	0.52	+0.5
2,378,224	-		ABIE40_RS12195	0.52	-0.0
2,378,224	-		ABIE40_RS12195	0.52	-0.0
2,378,225	+		ABIE40_RS12195	0.52	-0.8
2,378,225	+		ABIE40_RS12195	0.52	-1.1
2,378,226	-		ABIE40_RS12195	0.52	+0.9
2,378,252	-		ABIE40_RS12195	0.54	-0.6
2,378,284	+		ABIE40_RS12195	0.57	-2.4
2,378,284	+		ABIE40_RS12195	0.57	-0.5
2,378,284	+		ABIE40_RS12195	0.57	-1.6
2,378,284	+		ABIE40_RS12195	0.57	+0.5
2,378,285	-		ABIE40_RS12195	0.57	+0.3
2,378,285	-		ABIE40_RS12195	0.57	-0.7
2,378,318	+		ABIE40_RS12195	0.60	+0.9
2,378,318	+		ABIE40_RS12195	0.60	-0.4
2,378,318	+		ABIE40_RS12195	0.60	-1.0
2,378,458	-		ABIE40_RS12195	0.72	+1.8
2,378,485	-		ABIE40_RS12195	0.74	+0.6