Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04175 and ABIE40_RS04180 overlap by 78 nucleotides ABIE40_RS04180 and ABIE40_RS04185 are separated by 101 nucleotides ABIE40_RS04185 and ABIE40_RS04190 are separated by 87 nucleotides ABIE40_RS04190 and ABIE40_RS04195 are separated by 82 nucleotides
ABIE40_RS04175: ABIE40_RS04175 - protein-disulfide reductase DsbD domain-containing protein, at 824,831 to 825,581
_RS04175
ABIE40_RS04180: ABIE40_RS04180 - hypothetical protein, at 825,504 to 825,716
_RS04180
ABIE40_RS04185: ABIE40_RS04185 - YqgE/AlgH family protein, at 825,818 to 826,423
_RS04185
ABIE40_RS04190: ABIE40_RS04190 - CsbD family protein, at 826,511 to 826,702
_RS04190
ABIE40_RS04195: ABIE40_RS04195 - putative zinc-binding metallopeptidase, at 826,785 to 827,870
_RS04195
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.820 kb on - strand at 824.820 kb on - strand at 824.820 kb on - strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.910 kb on + strand, within ABIE40_RS04175 at 824.910 kb on + strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.994 kb on + strand, within ABIE40_RS04175 at 824.994 kb on + strand, within ABIE40_RS04175 at 824.995 kb on - strand, within ABIE40_RS04175 at 824.995 kb on - strand, within ABIE40_RS04175 at 824.995 kb on - strand, within ABIE40_RS04175 at 824.995 kb on - strand, within ABIE40_RS04175 at 824.996 kb on - strand, within ABIE40_RS04175 at 825.314 kb on + strand, within ABIE40_RS04175 at 825.314 kb on + strand, within ABIE40_RS04175 at 825.314 kb on + strand, within ABIE40_RS04175 at 825.314 kb on + strand, within ABIE40_RS04175 at 825.331 kb on - strand, within ABIE40_RS04175 at 825.361 kb on + strand, within ABIE40_RS04175 at 825.361 kb on + strand, within ABIE40_RS04175 at 825.361 kb on + strand, within ABIE40_RS04175 at 825.361 kb on + strand, within ABIE40_RS04175 at 825.361 kb on + strand, within ABIE40_RS04175 at 825.362 kb on - strand, within ABIE40_RS04175 at 825.362 kb on - strand, within ABIE40_RS04175 at 825.436 kb on + strand, within ABIE40_RS04175 at 825.462 kb on + strand, within ABIE40_RS04175 at 825.462 kb on + strand, within ABIE40_RS04175 at 825.462 kb on + strand, within ABIE40_RS04175 at 825.462 kb on + strand, within ABIE40_RS04175 at 825.463 kb on - strand, within ABIE40_RS04175 at 825.463 kb on - strand, within ABIE40_RS04175 at 825.665 kb on + strand, within ABIE40_RS04180 at 825.666 kb on - strand, within ABIE40_RS04180 at 825.666 kb on - strand, within ABIE40_RS04180 at 825.713 kb on - strand at 825.727 kb on + strand at 825.728 kb on - strand at 825.817 kb on + strand at 825.817 kb on + strand at 825.817 kb on + strand at 825.817 kb on + strand at 825.817 kb on + strand at 825.817 kb on + strand at 825.817 kb on + strand at 825.818 kb on - strand at 825.818 kb on - strand at 825.818 kb on - strand at 825.926 kb on + strand, within ABIE40_RS04185 at 825.926 kb on + strand, within ABIE40_RS04185 at 825.926 kb on + strand, within ABIE40_RS04185 at 825.927 kb on - strand, within ABIE40_RS04185 at 825.928 kb on + strand, within ABIE40_RS04185 at 825.928 kb on + strand, within ABIE40_RS04185 at 825.928 kb on + strand, within ABIE40_RS04185 at 825.928 kb on + strand, within ABIE40_RS04185 at 825.928 kb on + strand, within ABIE40_RS04185 at 825.928 kb on + strand, within ABIE40_RS04185 at 825.928 kb on + strand, within ABIE40_RS04185 at 826.130 kb on + strand, within ABIE40_RS04185 at 826.130 kb on + strand, within ABIE40_RS04185 at 826.165 kb on + strand, within ABIE40_RS04185 at 826.166 kb on - strand, within ABIE40_RS04185 at 826.248 kb on - strand, within ABIE40_RS04185 at 826.355 kb on + strand, within ABIE40_RS04185 at 826.356 kb on - strand, within ABIE40_RS04185 at 826.446 kb on + strand at 826.446 kb on + strand at 826.446 kb on + strand at 826.447 kb on - strand at 826.456 kb on + strand at 826.457 kb on - strand at 826.457 kb on - strand at 826.510 kb on + strand at 826.517 kb on - strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.700 kb on + strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.701 kb on - strand at 826.982 kb on + strand, within ABIE40_RS04195 at 826.983 kb on - strand, within ABIE40_RS04195 at 827.066 kb on + strand, within ABIE40_RS04195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 824,819 + -0.8 824,819 + +1.8 824,819 + -0.1 824,819 + +0.3 824,819 + +0.1 824,819 + +0.7 824,819 + -1.2 824,820 - -0.5 824,820 - -0.2 824,820 - +0.2 824,821 + -2.5 824,821 + -2.8 824,821 + -1.1 824,821 + -1.2 824,821 + +0.2 824,821 + -0.4 824,821 + +1.6 824,821 + -0.5 824,822 - +0.2 824,822 - +0.6 824,822 - +0.6 824,822 - -0.2 824,822 - -0.5 824,822 - +0.3 824,910 + ABIE40_RS04175 0.11 +0.3 824,910 + ABIE40_RS04175 0.11 -1.5 824,911 - ABIE40_RS04175 0.11 +0.9 824,911 - ABIE40_RS04175 0.11 +0.4 824,911 - ABIE40_RS04175 0.11 -1.8 824,911 - ABIE40_RS04175 0.11 +0.8 824,911 - ABIE40_RS04175 0.11 -1.6 824,994 + ABIE40_RS04175 0.22 -0.1 824,994 + ABIE40_RS04175 0.22 -0.8 824,995 - ABIE40_RS04175 0.22 +0.4 824,995 - ABIE40_RS04175 0.22 -0.4 824,995 - ABIE40_RS04175 0.22 +0.4 824,995 - ABIE40_RS04175 0.22 +0.4 824,996 - ABIE40_RS04175 0.22 +0.8 825,314 + ABIE40_RS04175 0.64 -0.0 825,314 + ABIE40_RS04175 0.64 +1.2 825,314 + ABIE40_RS04175 0.64 -0.4 825,314 + ABIE40_RS04175 0.64 +0.3 825,331 - ABIE40_RS04175 0.67 -0.3 825,361 + ABIE40_RS04175 0.71 +0.5 825,361 + ABIE40_RS04175 0.71 -0.7 825,361 + ABIE40_RS04175 0.71 -0.3 825,361 + ABIE40_RS04175 0.71 +0.1 825,361 + ABIE40_RS04175 0.71 -1.9 825,362 - ABIE40_RS04175 0.71 +0.3 825,362 - ABIE40_RS04175 0.71 +0.5 825,436 + ABIE40_RS04175 0.81 +3.2 825,462 + ABIE40_RS04175 0.84 +0.2 825,462 + ABIE40_RS04175 0.84 +0.3 825,462 + ABIE40_RS04175 0.84 +3.6 825,462 + ABIE40_RS04175 0.84 +0.4 825,463 - ABIE40_RS04175 0.84 -2.7 825,463 - ABIE40_RS04175 0.84 -1.0 825,665 + ABIE40_RS04180 0.76 -0.7 825,666 - ABIE40_RS04180 0.76 -0.5 825,666 - ABIE40_RS04180 0.76 +1.2 825,713 - -1.4 825,727 + +0.2 825,728 - -2.1 825,817 + +1.0 825,817 + +1.4 825,817 + +1.6 825,817 + +0.1 825,817 + -2.0 825,817 + -0.6 825,817 + -0.3 825,818 - -0.5 825,818 - -0.4 825,818 - -1.4 825,926 + ABIE40_RS04185 0.18 +3.2 825,926 + ABIE40_RS04185 0.18 +1.5 825,926 + ABIE40_RS04185 0.18 -0.6 825,927 - ABIE40_RS04185 0.18 +0.5 825,928 + ABIE40_RS04185 0.18 -0.4 825,928 + ABIE40_RS04185 0.18 -1.1 825,928 + ABIE40_RS04185 0.18 -2.2 825,928 + ABIE40_RS04185 0.18 +0.4 825,928 + ABIE40_RS04185 0.18 +0.6 825,928 + ABIE40_RS04185 0.18 -0.2 825,928 + ABIE40_RS04185 0.18 -3.1 826,130 + ABIE40_RS04185 0.51 -1.2 826,130 + ABIE40_RS04185 0.51 -0.5 826,165 + ABIE40_RS04185 0.57 +1.9 826,166 - ABIE40_RS04185 0.57 +2.5 826,248 - ABIE40_RS04185 0.71 -0.6 826,355 + ABIE40_RS04185 0.89 +0.0 826,356 - ABIE40_RS04185 0.89 +0.9 826,446 + -0.4 826,446 + -0.2 826,446 + +1.0 826,447 - -0.0 826,456 + -1.2 826,457 - -0.4 826,457 - -0.4 826,510 + -0.1 826,517 - +0.5 826,700 + -0.2 826,700 + +0.2 826,700 + -0.4 826,700 + -1.3 826,700 + -1.1 826,700 + -2.4 826,700 + +0.4 826,700 + -0.1 826,700 + -0.6 826,700 + -0.4 826,700 + -0.1 826,700 + -0.1 826,701 - +0.9 826,701 - -0.5 826,701 - +0.6 826,701 - -1.0 826,701 - -0.5 826,701 - -0.5 826,701 - -1.1 826,701 - -0.4 826,701 - -0.2 826,701 - +2.6 826,701 - +1.2 826,701 - -1.5 826,701 - +0.2 826,701 - -0.5 826,701 - +0.2 826,701 - -0.3 826,701 - -0.4 826,701 - +0.9 826,982 + ABIE40_RS04195 0.18 +1.8 826,983 - ABIE40_RS04195 0.18 -0.5 827,066 + ABIE40_RS04195 0.26 +2.4
Or see this region's nucleotide sequence