Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03565 and ABIE40_RS03570 are separated by 38 nucleotides ABIE40_RS03570 and ABIE40_RS03575 are separated by 8 nucleotides ABIE40_RS03575 and ABIE40_RS03580 are separated by 325 nucleotides
ABIE40_RS03565: ABIE40_RS03565 - glycolate oxidase subunit GlcF, at 708,628 to 709,938
_RS03565
ABIE40_RS03570: ABIE40_RS03570 - hypothetical protein, at 709,977 to 710,408
_RS03570
ABIE40_RS03575: ABIE40_RS03575 - porin family protein, at 710,417 to 711,076
_RS03575
ABIE40_RS03580: ABIE40_RS03580 - L,D-transpeptidase, at 711,402 to 712,073
_RS03580
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 709.457 kb on - strand, within ABIE40_RS03565 at 709.486 kb on + strand, within ABIE40_RS03565 at 709.487 kb on - strand, within ABIE40_RS03565 at 709.487 kb on - strand, within ABIE40_RS03565 at 709.537 kb on + strand, within ABIE40_RS03565 at 709.538 kb on - strand, within ABIE40_RS03565 at 709.566 kb on + strand, within ABIE40_RS03565 at 709.566 kb on + strand, within ABIE40_RS03565 at 709.566 kb on + strand, within ABIE40_RS03565 at 709.567 kb on - strand, within ABIE40_RS03565 at 709.567 kb on - strand, within ABIE40_RS03565 at 709.591 kb on + strand, within ABIE40_RS03565 at 709.592 kb on - strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.720 kb on + strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.721 kb on - strand, within ABIE40_RS03565 at 709.816 kb on - strand at 709.866 kb on + strand at 709.866 kb on + strand at 709.872 kb on - strand at 709.872 kb on - strand at 709.891 kb on + strand at 709.891 kb on + strand at 709.891 kb on + strand at 709.892 kb on - strand at 709.904 kb on + strand at 709.905 kb on - strand at 709.905 kb on - strand at 709.919 kb on + strand at 709.920 kb on - strand at 709.920 kb on - strand at 709.929 kb on + strand at 709.929 kb on + strand at 709.929 kb on + strand at 709.929 kb on + strand at 709.930 kb on - strand at 709.930 kb on - strand at 709.931 kb on + strand at 709.931 kb on + strand at 709.931 kb on + strand at 709.932 kb on - strand at 709.932 kb on - strand at 709.932 kb on - strand at 709.932 kb on - strand at 709.977 kb on - strand at 709.985 kb on + strand at 709.986 kb on - strand at 709.986 kb on - strand at 709.986 kb on - strand at 710.040 kb on - strand, within ABIE40_RS03570 at 710.046 kb on + strand, within ABIE40_RS03570 at 710.046 kb on + strand, within ABIE40_RS03570 at 710.046 kb on + strand, within ABIE40_RS03570 at 710.047 kb on - strand, within ABIE40_RS03570 at 710.047 kb on - strand, within ABIE40_RS03570 at 710.250 kb on + strand, within ABIE40_RS03570 at 710.251 kb on - strand, within ABIE40_RS03570 at 710.337 kb on + strand, within ABIE40_RS03570 at 710.337 kb on + strand, within ABIE40_RS03570 at 710.338 kb on - strand, within ABIE40_RS03570 at 710.338 kb on - strand, within ABIE40_RS03570 at 710.338 kb on - strand, within ABIE40_RS03570 at 710.338 kb on - strand, within ABIE40_RS03570 at 710.418 kb on + strand at 710.418 kb on + strand at 710.419 kb on - strand at 710.461 kb on + strand at 710.461 kb on + strand at 710.461 kb on + strand at 710.462 kb on - strand at 710.462 kb on - strand at 710.511 kb on + strand, within ABIE40_RS03575 at 710.511 kb on + strand, within ABIE40_RS03575 at 710.511 kb on + strand, within ABIE40_RS03575 at 710.511 kb on + strand, within ABIE40_RS03575 at 710.511 kb on + strand, within ABIE40_RS03575 at 710.511 kb on + strand, within ABIE40_RS03575 at 710.512 kb on - strand, within ABIE40_RS03575 at 710.523 kb on + strand, within ABIE40_RS03575 at 710.523 kb on + strand, within ABIE40_RS03575 at 710.523 kb on + strand, within ABIE40_RS03575 at 710.523 kb on + strand, within ABIE40_RS03575 at 710.676 kb on + strand, within ABIE40_RS03575 at 710.676 kb on + strand, within ABIE40_RS03575 at 710.676 kb on + strand, within ABIE40_RS03575 at 710.677 kb on - strand, within ABIE40_RS03575 at 710.799 kb on + strand, within ABIE40_RS03575 at 710.799 kb on + strand, within ABIE40_RS03575 at 710.800 kb on - strand, within ABIE40_RS03575 at 710.800 kb on - strand, within ABIE40_RS03575 at 710.815 kb on + strand, within ABIE40_RS03575 at 710.815 kb on + strand, within ABIE40_RS03575 at 710.815 kb on + strand, within ABIE40_RS03575 at 710.815 kb on + strand, within ABIE40_RS03575 at 710.816 kb on - strand, within ABIE40_RS03575 at 710.816 kb on - strand, within ABIE40_RS03575 at 710.817 kb on + strand, within ABIE40_RS03575 at 710.817 kb on + strand, within ABIE40_RS03575 at 710.817 kb on + strand, within ABIE40_RS03575 at 710.817 kb on + strand, within ABIE40_RS03575 at 710.817 kb on + strand, within ABIE40_RS03575 at 710.817 kb on + strand, within ABIE40_RS03575 at 710.818 kb on - strand, within ABIE40_RS03575 at 710.818 kb on - strand, within ABIE40_RS03575 at 710.818 kb on - strand, within ABIE40_RS03575 at 710.883 kb on + strand, within ABIE40_RS03575 at 710.884 kb on - strand, within ABIE40_RS03575 at 710.884 kb on - strand, within ABIE40_RS03575 at 710.887 kb on - strand, within ABIE40_RS03575 at 710.887 kb on - strand, within ABIE40_RS03575 at 710.887 kb on - strand, within ABIE40_RS03575 at 710.960 kb on - strand, within ABIE40_RS03575 at 710.976 kb on + strand, within ABIE40_RS03575 at 710.986 kb on - strand, within ABIE40_RS03575 at 710.986 kb on - strand, within ABIE40_RS03575 at 711.108 kb on + strand at 711.109 kb on - strand at 711.109 kb on - strand at 711.123 kb on - strand at 711.131 kb on + strand at 711.131 kb on + strand at 711.131 kb on + strand at 711.131 kb on + strand at 711.132 kb on - strand at 711.393 kb on + strand at 711.517 kb on + strand, within ABIE40_RS03580 at 711.517 kb on + strand, within ABIE40_RS03580 at 711.634 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.636 kb on + strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.637 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.641 kb on - strand, within ABIE40_RS03580 at 711.856 kb on + strand, within ABIE40_RS03580 at 711.856 kb on + strand, within ABIE40_RS03580 at 711.857 kb on - strand, within ABIE40_RS03580 at 711.857 kb on - strand, within ABIE40_RS03580 at 711.857 kb on - strand, within ABIE40_RS03580 at 711.857 kb on - strand, within ABIE40_RS03580 at 711.857 kb on - strand, within ABIE40_RS03580 at 711.857 kb on - strand, within ABIE40_RS03580 at 711.862 kb on + strand, within ABIE40_RS03580 at 711.862 kb on + strand, within ABIE40_RS03580 at 711.862 kb on + strand, within ABIE40_RS03580 at 711.862 kb on + strand, within ABIE40_RS03580 at 711.862 kb on + strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.863 kb on - strand, within ABIE40_RS03580 at 711.869 kb on - strand, within ABIE40_RS03580 at 711.918 kb on + strand, within ABIE40_RS03580 at 711.918 kb on + strand, within ABIE40_RS03580 at 711.919 kb on - strand, within ABIE40_RS03580 at 711.919 kb on - strand, within ABIE40_RS03580 at 712.064 kb on + strand at 712.064 kb on + strand at 712.065 kb on - strand at 712.065 kb on - strand at 712.065 kb on - strand at 712.065 kb on - strand at 712.065 kb on - strand at 712.065 kb on - strand at 712.065 kb on - strand at 712.065 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 709,457 - ABIE40_RS03565 0.63 -1.2 709,486 + ABIE40_RS03565 0.65 +1.3 709,487 - ABIE40_RS03565 0.66 +3.0 709,487 - ABIE40_RS03565 0.66 +0.6 709,537 + ABIE40_RS03565 0.69 +0.4 709,538 - ABIE40_RS03565 0.69 +0.7 709,566 + ABIE40_RS03565 0.72 +0.6 709,566 + ABIE40_RS03565 0.72 +0.8 709,566 + ABIE40_RS03565 0.72 +0.3 709,567 - ABIE40_RS03565 0.72 -0.8 709,567 - ABIE40_RS03565 0.72 -0.2 709,591 + ABIE40_RS03565 0.73 -2.7 709,592 - ABIE40_RS03565 0.74 -2.0 709,720 + ABIE40_RS03565 0.83 -0.2 709,720 + ABIE40_RS03565 0.83 +0.3 709,720 + ABIE40_RS03565 0.83 -0.3 709,720 + ABIE40_RS03565 0.83 +1.1 709,720 + ABIE40_RS03565 0.83 +1.2 709,720 + ABIE40_RS03565 0.83 -1.0 709,720 + ABIE40_RS03565 0.83 -0.2 709,720 + ABIE40_RS03565 0.83 -0.7 709,721 - ABIE40_RS03565 0.83 +2.1 709,721 - ABIE40_RS03565 0.83 +0.5 709,721 - ABIE40_RS03565 0.83 -0.6 709,721 - ABIE40_RS03565 0.83 -1.2 709,721 - ABIE40_RS03565 0.83 -0.4 709,721 - ABIE40_RS03565 0.83 -2.1 709,721 - ABIE40_RS03565 0.83 -1.9 709,721 - ABIE40_RS03565 0.83 -0.6 709,721 - ABIE40_RS03565 0.83 -0.8 709,721 - ABIE40_RS03565 0.83 +0.4 709,721 - ABIE40_RS03565 0.83 -0.8 709,721 - ABIE40_RS03565 0.83 +0.6 709,721 - ABIE40_RS03565 0.83 +0.0 709,721 - ABIE40_RS03565 0.83 -0.8 709,721 - ABIE40_RS03565 0.83 -0.7 709,816 - -1.0 709,866 + -1.7 709,866 + +1.3 709,872 - -0.4 709,872 - +0.2 709,891 + +0.2 709,891 + -0.2 709,891 + -1.0 709,892 - -1.9 709,904 + -1.2 709,905 - -0.5 709,905 - +0.4 709,919 + -0.2 709,920 - +0.4 709,920 - +1.2 709,929 + -1.8 709,929 + -0.8 709,929 + +0.3 709,929 + +0.2 709,930 - -0.1 709,930 - -1.4 709,931 + -0.5 709,931 + -0.8 709,931 + +0.6 709,932 - -0.9 709,932 - -2.2 709,932 - +0.3 709,932 - -1.0 709,977 - +0.2 709,985 + -0.7 709,986 - +1.3 709,986 - +0.1 709,986 - -0.0 710,040 - ABIE40_RS03570 0.15 -1.2 710,046 + ABIE40_RS03570 0.16 +4.8 710,046 + ABIE40_RS03570 0.16 +0.4 710,046 + ABIE40_RS03570 0.16 +0.7 710,047 - ABIE40_RS03570 0.16 +1.7 710,047 - ABIE40_RS03570 0.16 +1.6 710,250 + ABIE40_RS03570 0.63 -0.2 710,251 - ABIE40_RS03570 0.63 -1.1 710,337 + ABIE40_RS03570 0.83 -0.5 710,337 + ABIE40_RS03570 0.83 -0.7 710,338 - ABIE40_RS03570 0.84 +2.1 710,338 - ABIE40_RS03570 0.84 -0.3 710,338 - ABIE40_RS03570 0.84 -1.0 710,338 - ABIE40_RS03570 0.84 -0.7 710,418 + -0.2 710,418 + -1.0 710,419 - +0.0 710,461 + +0.3 710,461 + +1.2 710,461 + +0.6 710,462 - -2.3 710,462 - -0.8 710,511 + ABIE40_RS03575 0.14 -0.9 710,511 + ABIE40_RS03575 0.14 -1.1 710,511 + ABIE40_RS03575 0.14 -2.1 710,511 + ABIE40_RS03575 0.14 -0.7 710,511 + ABIE40_RS03575 0.14 +0.3 710,511 + ABIE40_RS03575 0.14 -0.1 710,512 - ABIE40_RS03575 0.14 +3.6 710,523 + ABIE40_RS03575 0.16 +0.5 710,523 + ABIE40_RS03575 0.16 -0.6 710,523 + ABIE40_RS03575 0.16 -0.9 710,523 + ABIE40_RS03575 0.16 -1.3 710,676 + ABIE40_RS03575 0.39 +0.1 710,676 + ABIE40_RS03575 0.39 -1.7 710,676 + ABIE40_RS03575 0.39 -0.3 710,677 - ABIE40_RS03575 0.39 -1.3 710,799 + ABIE40_RS03575 0.58 +1.1 710,799 + ABIE40_RS03575 0.58 +0.3 710,800 - ABIE40_RS03575 0.58 -0.9 710,800 - ABIE40_RS03575 0.58 -0.7 710,815 + ABIE40_RS03575 0.60 -0.2 710,815 + ABIE40_RS03575 0.60 -1.4 710,815 + ABIE40_RS03575 0.60 -1.4 710,815 + ABIE40_RS03575 0.60 +1.6 710,816 - ABIE40_RS03575 0.60 -1.0 710,816 - ABIE40_RS03575 0.60 -1.9 710,817 + ABIE40_RS03575 0.61 -0.3 710,817 + ABIE40_RS03575 0.61 -1.3 710,817 + ABIE40_RS03575 0.61 -0.6 710,817 + ABIE40_RS03575 0.61 -0.6 710,817 + ABIE40_RS03575 0.61 +0.2 710,817 + ABIE40_RS03575 0.61 +0.1 710,818 - ABIE40_RS03575 0.61 +0.6 710,818 - ABIE40_RS03575 0.61 -0.9 710,818 - ABIE40_RS03575 0.61 -0.9 710,883 + ABIE40_RS03575 0.71 -1.5 710,884 - ABIE40_RS03575 0.71 +1.0 710,884 - ABIE40_RS03575 0.71 +0.8 710,887 - ABIE40_RS03575 0.71 +0.4 710,887 - ABIE40_RS03575 0.71 -1.6 710,887 - ABIE40_RS03575 0.71 +0.7 710,960 - ABIE40_RS03575 0.82 -0.4 710,976 + ABIE40_RS03575 0.85 +0.3 710,986 - ABIE40_RS03575 0.86 -0.5 710,986 - ABIE40_RS03575 0.86 -0.0 711,108 + -2.5 711,109 - -0.9 711,109 - -0.9 711,123 - +0.2 711,131 + -1.3 711,131 + -0.1 711,131 + +0.3 711,131 + -0.5 711,132 - +0.7 711,393 + +1.6 711,517 + ABIE40_RS03580 0.17 -0.4 711,517 + ABIE40_RS03580 0.17 -1.2 711,634 + ABIE40_RS03580 0.35 -0.5 711,636 + ABIE40_RS03580 0.35 -1.7 711,636 + ABIE40_RS03580 0.35 +0.6 711,636 + ABIE40_RS03580 0.35 +1.0 711,636 + ABIE40_RS03580 0.35 -0.5 711,636 + ABIE40_RS03580 0.35 -2.4 711,636 + ABIE40_RS03580 0.35 -1.1 711,636 + ABIE40_RS03580 0.35 +0.5 711,636 + ABIE40_RS03580 0.35 -0.2 711,637 - ABIE40_RS03580 0.35 -1.3 711,637 - ABIE40_RS03580 0.35 -1.6 711,637 - ABIE40_RS03580 0.35 +0.6 711,637 - ABIE40_RS03580 0.35 +0.4 711,637 - ABIE40_RS03580 0.35 +1.0 711,637 - ABIE40_RS03580 0.35 -0.4 711,637 - ABIE40_RS03580 0.35 -1.2 711,637 - ABIE40_RS03580 0.35 -0.4 711,641 - ABIE40_RS03580 0.36 +0.3 711,641 - ABIE40_RS03580 0.36 +2.6 711,641 - ABIE40_RS03580 0.36 -0.1 711,641 - ABIE40_RS03580 0.36 -0.0 711,641 - ABIE40_RS03580 0.36 +0.7 711,641 - ABIE40_RS03580 0.36 -1.3 711,641 - ABIE40_RS03580 0.36 -0.6 711,641 - ABIE40_RS03580 0.36 +0.2 711,641 - ABIE40_RS03580 0.36 -0.4 711,641 - ABIE40_RS03580 0.36 -0.5 711,641 - ABIE40_RS03580 0.36 -0.2 711,641 - ABIE40_RS03580 0.36 -0.1 711,641 - ABIE40_RS03580 0.36 -1.2 711,641 - ABIE40_RS03580 0.36 +2.6 711,641 - ABIE40_RS03580 0.36 -0.7 711,641 - ABIE40_RS03580 0.36 +0.3 711,856 + ABIE40_RS03580 0.68 -1.6 711,856 + ABIE40_RS03580 0.68 -2.3 711,857 - ABIE40_RS03580 0.68 -0.2 711,857 - ABIE40_RS03580 0.68 -0.1 711,857 - ABIE40_RS03580 0.68 -0.8 711,857 - ABIE40_RS03580 0.68 -1.0 711,857 - ABIE40_RS03580 0.68 +0.1 711,857 - ABIE40_RS03580 0.68 -0.1 711,862 + ABIE40_RS03580 0.68 -0.1 711,862 + ABIE40_RS03580 0.68 -0.3 711,862 + ABIE40_RS03580 0.68 -1.4 711,862 + ABIE40_RS03580 0.68 -0.1 711,862 + ABIE40_RS03580 0.68 +0.5 711,863 - ABIE40_RS03580 0.69 -0.6 711,863 - ABIE40_RS03580 0.69 -0.7 711,863 - ABIE40_RS03580 0.69 +0.5 711,863 - ABIE40_RS03580 0.69 +0.0 711,863 - ABIE40_RS03580 0.69 +0.8 711,863 - ABIE40_RS03580 0.69 -2.6 711,863 - ABIE40_RS03580 0.69 +0.8 711,863 - ABIE40_RS03580 0.69 -0.7 711,863 - ABIE40_RS03580 0.69 +0.5 711,869 - ABIE40_RS03580 0.69 +1.4 711,918 + ABIE40_RS03580 0.77 -0.0 711,918 + ABIE40_RS03580 0.77 +0.2 711,919 - ABIE40_RS03580 0.77 -0.0 711,919 - ABIE40_RS03580 0.77 -0.5 712,064 + +0.8 712,064 + -0.1 712,065 - -0.7 712,065 - +0.5 712,065 - +0.0 712,065 - +0.6 712,065 - -0.1 712,065 - -1.4 712,065 - +0.5 712,065 - +0.0
Or see this region's nucleotide sequence