Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03285 and ABIE40_RS03290 are separated by 163 nucleotides ABIE40_RS03290 and ABIE40_RS03295 are separated by 225 nucleotides
ABIE40_RS03285: ABIE40_RS03285 - AsmA family protein, at 652,758 to 654,647
_RS03285
ABIE40_RS03290: ABIE40_RS03290 - acetoacetate--CoA ligase, at 654,811 to 656,763
_RS03290
ABIE40_RS03295: ABIE40_RS03295 - ATP-binding protein, at 656,989 to 660,609
_RS03295
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 653.813 kb on + strand, within ABIE40_RS03285 at 653.813 kb on + strand, within ABIE40_RS03285 at 653.814 kb on - strand, within ABIE40_RS03285 at 653.814 kb on - strand, within ABIE40_RS03285 at 653.814 kb on - strand, within ABIE40_RS03285 at 654.026 kb on + strand, within ABIE40_RS03285 at 654.052 kb on + strand, within ABIE40_RS03285 at 654.052 kb on + strand, within ABIE40_RS03285 at 654.053 kb on - strand, within ABIE40_RS03285 at 654.053 kb on - strand, within ABIE40_RS03285 at 654.053 kb on - strand, within ABIE40_RS03285 at 654.053 kb on - strand, within ABIE40_RS03285 at 654.053 kb on - strand, within ABIE40_RS03285 at 654.078 kb on - strand, within ABIE40_RS03285 at 654.104 kb on + strand, within ABIE40_RS03285 at 654.105 kb on - strand, within ABIE40_RS03285 at 654.199 kb on + strand, within ABIE40_RS03285 at 654.199 kb on + strand, within ABIE40_RS03285 at 654.200 kb on - strand, within ABIE40_RS03285 at 654.200 kb on - strand, within ABIE40_RS03285 at 654.445 kb on + strand, within ABIE40_RS03285 at 654.445 kb on + strand, within ABIE40_RS03285 at 654.445 kb on + strand, within ABIE40_RS03285 at 654.445 kb on + strand, within ABIE40_RS03285 at 654.446 kb on - strand, within ABIE40_RS03285 at 654.551 kb on + strand at 654.551 kb on + strand at 654.552 kb on - strand at 654.552 kb on - strand at 654.578 kb on + strand at 654.578 kb on + strand at 654.578 kb on + strand at 654.578 kb on + strand at 654.579 kb on - strand at 654.579 kb on - strand at 654.579 kb on - strand at 654.581 kb on + strand at 654.581 kb on + strand at 654.641 kb on + strand at 654.701 kb on + strand at 654.703 kb on + strand at 654.704 kb on - strand at 654.704 kb on - strand at 654.704 kb on - strand at 654.704 kb on - strand at 654.704 kb on - strand at 654.761 kb on + strand at 654.761 kb on + strand at 654.761 kb on + strand at 654.761 kb on + strand at 654.762 kb on - strand at 654.781 kb on + strand at 654.781 kb on + strand at 654.781 kb on + strand at 654.781 kb on + strand at 654.781 kb on + strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.782 kb on - strand at 654.783 kb on + strand at 654.783 kb on + strand at 654.783 kb on + strand at 654.783 kb on + strand at 654.783 kb on + strand at 654.783 kb on + strand at 654.783 kb on + strand at 654.783 kb on + strand at 654.784 kb on - strand at 654.784 kb on - strand at 654.784 kb on - strand at 654.784 kb on - strand at 654.784 kb on - strand at 654.786 kb on - strand at 654.786 kb on - strand at 654.922 kb on + strand at 655.332 kb on - strand, within ABIE40_RS03290 at 655.400 kb on - strand, within ABIE40_RS03290 at 655.400 kb on - strand, within ABIE40_RS03290 at 655.400 kb on - strand, within ABIE40_RS03290 at 655.400 kb on - strand, within ABIE40_RS03290 at 655.400 kb on - strand, within ABIE40_RS03290 at 655.405 kb on + strand, within ABIE40_RS03290 at 655.405 kb on + strand, within ABIE40_RS03290 at 655.405 kb on + strand, within ABIE40_RS03290 at 655.405 kb on + strand, within ABIE40_RS03290 at 655.405 kb on + strand, within ABIE40_RS03290 at 655.406 kb on - strand, within ABIE40_RS03290 at 655.406 kb on - strand, within ABIE40_RS03290 at 655.406 kb on - strand, within ABIE40_RS03290 at 655.407 kb on + strand, within ABIE40_RS03290 at 655.408 kb on - strand, within ABIE40_RS03290 at 655.486 kb on + strand, within ABIE40_RS03290 at 655.558 kb on + strand, within ABIE40_RS03290 at 655.610 kb on - strand, within ABIE40_RS03290 at 655.610 kb on - strand, within ABIE40_RS03290 at 655.610 kb on - strand, within ABIE40_RS03290 at 655.738 kb on + strand, within ABIE40_RS03290 at 655.739 kb on - strand, within ABIE40_RS03290 at 655.739 kb on - strand, within ABIE40_RS03290 at 655.739 kb on - strand, within ABIE40_RS03290 at 655.859 kb on - strand, within ABIE40_RS03290 at 655.903 kb on + strand, within ABIE40_RS03290 at 655.903 kb on + strand, within ABIE40_RS03290 at 655.904 kb on - strand, within ABIE40_RS03290 at 655.904 kb on - strand, within ABIE40_RS03290 at 655.904 kb on - strand, within ABIE40_RS03290 at 655.905 kb on + strand, within ABIE40_RS03290 at 655.905 kb on + strand, within ABIE40_RS03290 at 655.905 kb on + strand, within ABIE40_RS03290 at 655.905 kb on + strand, within ABIE40_RS03290 at 655.905 kb on + strand, within ABIE40_RS03290 at 655.906 kb on - strand, within ABIE40_RS03290 at 655.906 kb on - strand, within ABIE40_RS03290 at 655.906 kb on - strand, within ABIE40_RS03290 at 655.906 kb on - strand, within ABIE40_RS03290 at 656.020 kb on + strand, within ABIE40_RS03290 at 656.020 kb on + strand, within ABIE40_RS03290 at 656.020 kb on + strand, within ABIE40_RS03290 at 656.021 kb on - strand, within ABIE40_RS03290 at 656.021 kb on - strand, within ABIE40_RS03290 at 656.021 kb on - strand, within ABIE40_RS03290 at 656.048 kb on + strand, within ABIE40_RS03290 at 656.272 kb on + strand, within ABIE40_RS03290 at 656.272 kb on + strand, within ABIE40_RS03290 at 656.272 kb on + strand, within ABIE40_RS03290 at 656.272 kb on + strand, within ABIE40_RS03290 at 656.304 kb on + strand, within ABIE40_RS03290 at 656.304 kb on + strand, within ABIE40_RS03290 at 656.305 kb on - strand, within ABIE40_RS03290 at 656.305 kb on - strand, within ABIE40_RS03290 at 656.305 kb on - strand, within ABIE40_RS03290 at 656.305 kb on - strand, within ABIE40_RS03290 at 656.305 kb on - strand, within ABIE40_RS03290 at 656.407 kb on - strand, within ABIE40_RS03290 at 656.419 kb on + strand, within ABIE40_RS03290 at 656.419 kb on + strand, within ABIE40_RS03290 at 656.419 kb on + strand, within ABIE40_RS03290 at 656.419 kb on + strand, within ABIE40_RS03290 at 656.419 kb on + strand, within ABIE40_RS03290 at 656.419 kb on + strand, within ABIE40_RS03290 at 656.420 kb on - strand, within ABIE40_RS03290 at 656.420 kb on - strand, within ABIE40_RS03290 at 656.420 kb on - strand, within ABIE40_RS03290 at 656.420 kb on - strand, within ABIE40_RS03290 at 656.420 kb on - strand, within ABIE40_RS03290 at 656.420 kb on - strand, within ABIE40_RS03290 at 656.556 kb on - strand, within ABIE40_RS03290 at 656.631 kb on + strand at 656.692 kb on - strand at 656.732 kb on + strand at 656.788 kb on + strand at 656.789 kb on - strand at 656.888 kb on + strand at 656.888 kb on + strand at 656.889 kb on - strand at 656.889 kb on - strand at 656.889 kb on - strand at 656.964 kb on + strand at 657.021 kb on + strand at 657.022 kb on - strand at 657.249 kb on - strand at 657.249 kb on - strand at 657.571 kb on - strand, within ABIE40_RS03295
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 653,813 + ABIE40_RS03285 0.56 -0.8 653,813 + ABIE40_RS03285 0.56 +0.7 653,814 - ABIE40_RS03285 0.56 +0.0 653,814 - ABIE40_RS03285 0.56 -1.1 653,814 - ABIE40_RS03285 0.56 +1.6 654,026 + ABIE40_RS03285 0.67 +0.2 654,052 + ABIE40_RS03285 0.68 +0.0 654,052 + ABIE40_RS03285 0.68 +0.0 654,053 - ABIE40_RS03285 0.69 +1.6 654,053 - ABIE40_RS03285 0.69 -0.1 654,053 - ABIE40_RS03285 0.69 -1.0 654,053 - ABIE40_RS03285 0.69 -0.3 654,053 - ABIE40_RS03285 0.69 -0.1 654,078 - ABIE40_RS03285 0.70 -0.1 654,104 + ABIE40_RS03285 0.71 -0.3 654,105 - ABIE40_RS03285 0.71 +0.3 654,199 + ABIE40_RS03285 0.76 +1.2 654,199 + ABIE40_RS03285 0.76 -0.7 654,200 - ABIE40_RS03285 0.76 -0.6 654,200 - ABIE40_RS03285 0.76 -0.6 654,445 + ABIE40_RS03285 0.89 +1.1 654,445 + ABIE40_RS03285 0.89 +0.1 654,445 + ABIE40_RS03285 0.89 +0.9 654,445 + ABIE40_RS03285 0.89 -0.3 654,446 - ABIE40_RS03285 0.89 -0.9 654,551 + -0.2 654,551 + -0.3 654,552 - -0.1 654,552 - -0.1 654,578 + +0.2 654,578 + -0.0 654,578 + +1.2 654,578 + -0.5 654,579 - -2.0 654,579 - +1.1 654,579 - -1.0 654,581 + -1.0 654,581 + -0.7 654,641 + -0.8 654,701 + +0.3 654,703 + -0.0 654,704 - +1.1 654,704 - -0.3 654,704 - -0.5 654,704 - -1.5 654,704 - -0.7 654,761 + -0.6 654,761 + +0.1 654,761 + -0.8 654,761 + -2.1 654,762 - +0.7 654,781 + -0.3 654,781 + -0.3 654,781 + -1.0 654,781 + +1.6 654,781 + -0.0 654,782 - -2.0 654,782 - -0.9 654,782 - +1.3 654,782 - -0.4 654,782 - -0.1 654,782 - +0.5 654,782 - -2.0 654,782 - -1.4 654,782 - +0.1 654,783 + -0.3 654,783 + +0.9 654,783 + +0.1 654,783 + -1.0 654,783 + +0.0 654,783 + -0.6 654,783 + +0.4 654,783 + -0.4 654,784 - +0.7 654,784 - -0.7 654,784 - -0.4 654,784 - -0.2 654,784 - -0.0 654,786 - -0.3 654,786 - -1.1 654,922 + +0.0 655,332 - ABIE40_RS03290 0.27 +0.6 655,400 - ABIE40_RS03290 0.30 +0.9 655,400 - ABIE40_RS03290 0.30 +0.5 655,400 - ABIE40_RS03290 0.30 +2.6 655,400 - ABIE40_RS03290 0.30 +1.2 655,400 - ABIE40_RS03290 0.30 +0.8 655,405 + ABIE40_RS03290 0.30 +1.2 655,405 + ABIE40_RS03290 0.30 -0.2 655,405 + ABIE40_RS03290 0.30 -0.1 655,405 + ABIE40_RS03290 0.30 +0.4 655,405 + ABIE40_RS03290 0.30 +1.3 655,406 - ABIE40_RS03290 0.30 +1.6 655,406 - ABIE40_RS03290 0.30 +1.1 655,406 - ABIE40_RS03290 0.30 +0.6 655,407 + ABIE40_RS03290 0.31 +0.9 655,408 - ABIE40_RS03290 0.31 +0.1 655,486 + ABIE40_RS03290 0.35 +1.0 655,558 + ABIE40_RS03290 0.38 +2.6 655,610 - ABIE40_RS03290 0.41 +0.9 655,610 - ABIE40_RS03290 0.41 +1.8 655,610 - ABIE40_RS03290 0.41 +0.7 655,738 + ABIE40_RS03290 0.47 +1.6 655,739 - ABIE40_RS03290 0.48 -0.0 655,739 - ABIE40_RS03290 0.48 +0.6 655,739 - ABIE40_RS03290 0.48 +0.1 655,859 - ABIE40_RS03290 0.54 -0.8 655,903 + ABIE40_RS03290 0.56 +1.2 655,903 + ABIE40_RS03290 0.56 +0.4 655,904 - ABIE40_RS03290 0.56 +1.3 655,904 - ABIE40_RS03290 0.56 +1.0 655,904 - ABIE40_RS03290 0.56 +0.8 655,905 + ABIE40_RS03290 0.56 +0.5 655,905 + ABIE40_RS03290 0.56 +0.6 655,905 + ABIE40_RS03290 0.56 +0.7 655,905 + ABIE40_RS03290 0.56 -1.1 655,905 + ABIE40_RS03290 0.56 +0.5 655,906 - ABIE40_RS03290 0.56 +1.1 655,906 - ABIE40_RS03290 0.56 -1.7 655,906 - ABIE40_RS03290 0.56 +0.2 655,906 - ABIE40_RS03290 0.56 +2.8 656,020 + ABIE40_RS03290 0.62 +1.8 656,020 + ABIE40_RS03290 0.62 +1.3 656,020 + ABIE40_RS03290 0.62 +1.7 656,021 - ABIE40_RS03290 0.62 +0.6 656,021 - ABIE40_RS03290 0.62 +1.2 656,021 - ABIE40_RS03290 0.62 +0.7 656,048 + ABIE40_RS03290 0.63 -0.9 656,272 + ABIE40_RS03290 0.75 +0.4 656,272 + ABIE40_RS03290 0.75 +0.7 656,272 + ABIE40_RS03290 0.75 +1.6 656,272 + ABIE40_RS03290 0.75 +1.4 656,304 + ABIE40_RS03290 0.76 +0.0 656,304 + ABIE40_RS03290 0.76 +1.8 656,305 - ABIE40_RS03290 0.76 +0.9 656,305 - ABIE40_RS03290 0.76 +3.1 656,305 - ABIE40_RS03290 0.76 +0.4 656,305 - ABIE40_RS03290 0.76 +2.4 656,305 - ABIE40_RS03290 0.76 +1.9 656,407 - ABIE40_RS03290 0.82 +0.9 656,419 + ABIE40_RS03290 0.82 +0.7 656,419 + ABIE40_RS03290 0.82 -0.1 656,419 + ABIE40_RS03290 0.82 +1.0 656,419 + ABIE40_RS03290 0.82 -0.1 656,419 + ABIE40_RS03290 0.82 +1.2 656,419 + ABIE40_RS03290 0.82 +1.4 656,420 - ABIE40_RS03290 0.82 +1.1 656,420 - ABIE40_RS03290 0.82 +0.6 656,420 - ABIE40_RS03290 0.82 +1.6 656,420 - ABIE40_RS03290 0.82 +0.7 656,420 - ABIE40_RS03290 0.82 -0.0 656,420 - ABIE40_RS03290 0.82 +1.3 656,556 - ABIE40_RS03290 0.89 +1.3 656,631 + +0.9 656,692 - -0.7 656,732 + +0.8 656,788 + +0.0 656,789 - +1.2 656,888 + -2.2 656,888 + -0.4 656,889 - -0.3 656,889 - -1.8 656,889 - -0.0 656,964 + +0.2 657,021 + +0.6 657,022 - -0.3 657,249 - -1.0 657,249 - -0.5 657,571 - ABIE40_RS03295 0.16 -1.2
Or see this region's nucleotide sequence