Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01820 and ABIE40_RS01825 are separated by 44 nucleotides ABIE40_RS01825 and ABIE40_RS01830 overlap by 9 nucleotides ABIE40_RS01830 and ABIE40_RS01835 are separated by 112 nucleotides ABIE40_RS01835 and ABIE40_RS01840 are separated by 29 nucleotides
ABIE40_RS01820: ABIE40_RS01820 - carbon monoxide dehydrogenase subunit G, at 361,264 to 361,716
_RS01820
ABIE40_RS01825: ABIE40_RS01825 - GNAT family N-acetyltransferase, at 361,761 to 362,207
_RS01825
ABIE40_RS01830: ABIE40_RS01830 - LapA family protein, at 362,199 to 362,531
_RS01830
ABIE40_RS01835: ABIE40_RS01835 - integration host factor subunit beta, at 362,644 to 362,943
_RS01835
ABIE40_RS01840: ABIE40_RS01840 - signal peptide peptidase SppA, at 362,973 to 363,923
_RS01840
Position (kb) 362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.231 kb on + strand at 361.232 kb on - strand at 361.237 kb on + strand at 361.237 kb on + strand at 361.238 kb on - strand at 361.238 kb on - strand at 361.269 kb on + strand at 361.269 kb on + strand at 361.269 kb on + strand at 361.270 kb on - strand at 361.270 kb on - strand at 361.270 kb on - strand at 361.310 kb on + strand, within ABIE40_RS01820 at 361.311 kb on - strand, within ABIE40_RS01820 at 361.351 kb on - strand, within ABIE40_RS01820 at 361.351 kb on - strand, within ABIE40_RS01820 at 361.483 kb on + strand, within ABIE40_RS01820 at 361.483 kb on + strand, within ABIE40_RS01820 at 361.484 kb on - strand, within ABIE40_RS01820 at 361.484 kb on - strand, within ABIE40_RS01820 at 361.547 kb on + strand, within ABIE40_RS01820 at 361.548 kb on - strand, within ABIE40_RS01820 at 361.548 kb on - strand, within ABIE40_RS01820 at 361.582 kb on + strand, within ABIE40_RS01820 at 361.582 kb on + strand, within ABIE40_RS01820 at 361.582 kb on + strand, within ABIE40_RS01820 at 361.582 kb on + strand, within ABIE40_RS01820 at 361.584 kb on + strand, within ABIE40_RS01820 at 361.584 kb on + strand, within ABIE40_RS01820 at 361.585 kb on - strand, within ABIE40_RS01820 at 361.710 kb on + strand at 361.749 kb on + strand at 361.750 kb on - strand at 361.765 kb on - strand at 361.814 kb on + strand, within ABIE40_RS01825 at 361.814 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.818 kb on + strand, within ABIE40_RS01825 at 361.819 kb on - strand, within ABIE40_RS01825 at 361.819 kb on - strand, within ABIE40_RS01825 at 361.819 kb on - strand, within ABIE40_RS01825 at 361.819 kb on - strand, within ABIE40_RS01825 at 361.819 kb on - strand, within ABIE40_RS01825 at 361.819 kb on - strand, within ABIE40_RS01825 at 361.989 kb on + strand, within ABIE40_RS01825 at 361.989 kb on + strand, within ABIE40_RS01825 at 361.989 kb on + strand, within ABIE40_RS01825 at 361.989 kb on + strand, within ABIE40_RS01825 at 361.989 kb on + strand, within ABIE40_RS01825 at 361.990 kb on - strand, within ABIE40_RS01825 at 361.990 kb on - strand, within ABIE40_RS01825 at 361.990 kb on - strand, within ABIE40_RS01825 at 361.990 kb on - strand, within ABIE40_RS01825 at 361.990 kb on - strand, within ABIE40_RS01825 at 361.990 kb on - strand, within ABIE40_RS01825 at 361.991 kb on + strand, within ABIE40_RS01825 at 362.067 kb on + strand, within ABIE40_RS01825 at 362.068 kb on - strand, within ABIE40_RS01825 at 362.068 kb on - strand, within ABIE40_RS01825 at 362.068 kb on - strand, within ABIE40_RS01825 at 362.068 kb on - strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.112 kb on + strand, within ABIE40_RS01825 at 362.113 kb on - strand, within ABIE40_RS01825 at 362.113 kb on - strand, within ABIE40_RS01825 at 362.113 kb on - strand, within ABIE40_RS01825 at 362.113 kb on - strand, within ABIE40_RS01825 at 362.166 kb on + strand at 362.167 kb on - strand at 362.533 kb on + strand at 362.533 kb on + strand at 362.533 kb on + strand at 362.533 kb on + strand at 362.533 kb on + strand at 362.533 kb on + strand at 362.533 kb on + strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.534 kb on - strand at 362.583 kb on + strand at 362.583 kb on + strand at 362.584 kb on - strand at 362.594 kb on + strand at 362.594 kb on + strand at 362.595 kb on - strand at 362.891 kb on + strand, within ABIE40_RS01835 at 362.918 kb on - strand at 362.956 kb on - strand at 363.184 kb on + strand, within ABIE40_RS01840 at 363.184 kb on + strand, within ABIE40_RS01840 at 363.253 kb on + strand, within ABIE40_RS01840 at 363.253 kb on + strand, within ABIE40_RS01840 at 363.253 kb on + strand, within ABIE40_RS01840 at 363.254 kb on - strand, within ABIE40_RS01840 at 363.254 kb on - strand, within ABIE40_RS01840 at 363.275 kb on + strand, within ABIE40_RS01840 at 363.275 kb on + strand, within ABIE40_RS01840 at 363.275 kb on + strand, within ABIE40_RS01840 at 363.275 kb on + strand, within ABIE40_RS01840 at 363.276 kb on - strand, within ABIE40_RS01840 at 363.276 kb on - strand, within ABIE40_RS01840 at 363.276 kb on - strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.334 kb on + strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.335 kb on - strand, within ABIE40_RS01840 at 363.383 kb on + strand, within ABIE40_RS01840 at 363.384 kb on - strand, within ABIE40_RS01840 at 363.441 kb on + strand, within ABIE40_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 361,231 + +1.6 361,232 - +0.4 361,237 + -1.3 361,237 + -0.2 361,238 - -0.1 361,238 - +0.8 361,269 + -1.0 361,269 + +1.2 361,269 + -0.5 361,270 - +0.7 361,270 - -0.5 361,270 - +0.1 361,310 + ABIE40_RS01820 0.10 +0.2 361,311 - ABIE40_RS01820 0.10 +0.0 361,351 - ABIE40_RS01820 0.19 +1.9 361,351 - ABIE40_RS01820 0.19 -0.6 361,483 + ABIE40_RS01820 0.48 -0.8 361,483 + ABIE40_RS01820 0.48 -1.3 361,484 - ABIE40_RS01820 0.49 +0.9 361,484 - ABIE40_RS01820 0.49 -0.4 361,547 + ABIE40_RS01820 0.62 -0.3 361,548 - ABIE40_RS01820 0.63 +0.3 361,548 - ABIE40_RS01820 0.63 -0.3 361,582 + ABIE40_RS01820 0.70 -0.4 361,582 + ABIE40_RS01820 0.70 -0.9 361,582 + ABIE40_RS01820 0.70 -0.9 361,582 + ABIE40_RS01820 0.70 -1.2 361,584 + ABIE40_RS01820 0.71 -2.2 361,584 + ABIE40_RS01820 0.71 -2.0 361,585 - ABIE40_RS01820 0.71 +0.2 361,710 + +1.6 361,749 + +1.2 361,750 - +0.0 361,765 - +0.6 361,814 + ABIE40_RS01825 0.12 -0.2 361,814 + ABIE40_RS01825 0.12 -1.5 361,818 + ABIE40_RS01825 0.13 -0.2 361,818 + ABIE40_RS01825 0.13 -0.4 361,818 + ABIE40_RS01825 0.13 -0.8 361,818 + ABIE40_RS01825 0.13 -1.8 361,818 + ABIE40_RS01825 0.13 -0.1 361,818 + ABIE40_RS01825 0.13 +0.8 361,818 + ABIE40_RS01825 0.13 -0.8 361,818 + ABIE40_RS01825 0.13 -0.2 361,819 - ABIE40_RS01825 0.13 +1.1 361,819 - ABIE40_RS01825 0.13 +0.7 361,819 - ABIE40_RS01825 0.13 -0.4 361,819 - ABIE40_RS01825 0.13 -0.2 361,819 - ABIE40_RS01825 0.13 +0.4 361,819 - ABIE40_RS01825 0.13 +0.4 361,989 + ABIE40_RS01825 0.51 -0.3 361,989 + ABIE40_RS01825 0.51 -0.3 361,989 + ABIE40_RS01825 0.51 -2.1 361,989 + ABIE40_RS01825 0.51 +1.2 361,989 + ABIE40_RS01825 0.51 +0.2 361,990 - ABIE40_RS01825 0.51 +0.2 361,990 - ABIE40_RS01825 0.51 +0.1 361,990 - ABIE40_RS01825 0.51 -0.3 361,990 - ABIE40_RS01825 0.51 -0.1 361,990 - ABIE40_RS01825 0.51 +0.8 361,990 - ABIE40_RS01825 0.51 +0.1 361,991 + ABIE40_RS01825 0.51 +0.3 362,067 + ABIE40_RS01825 0.68 +0.5 362,068 - ABIE40_RS01825 0.69 +0.4 362,068 - ABIE40_RS01825 0.69 +1.7 362,068 - ABIE40_RS01825 0.69 -1.3 362,068 - ABIE40_RS01825 0.69 -1.2 362,112 + ABIE40_RS01825 0.79 -0.2 362,112 + ABIE40_RS01825 0.79 -0.1 362,112 + ABIE40_RS01825 0.79 -0.9 362,112 + ABIE40_RS01825 0.79 -2.5 362,112 + ABIE40_RS01825 0.79 -0.4 362,112 + ABIE40_RS01825 0.79 -0.5 362,112 + ABIE40_RS01825 0.79 +0.6 362,112 + ABIE40_RS01825 0.79 -0.2 362,113 - ABIE40_RS01825 0.79 -0.9 362,113 - ABIE40_RS01825 0.79 -1.3 362,113 - ABIE40_RS01825 0.79 -1.9 362,113 - ABIE40_RS01825 0.79 +0.1 362,166 + -0.2 362,167 - +0.3 362,533 + +1.3 362,533 + -0.4 362,533 + -0.3 362,533 + -1.6 362,533 + -1.3 362,533 + -0.5 362,533 + +0.0 362,534 - +0.8 362,534 - -0.1 362,534 - +0.6 362,534 - -0.4 362,534 - -1.6 362,534 - +0.2 362,534 - -0.0 362,534 - +0.9 362,534 - +0.2 362,534 - -0.6 362,534 - +1.5 362,534 - -1.1 362,534 - -1.0 362,583 + +0.3 362,583 + -0.7 362,584 - -1.4 362,594 + +1.5 362,594 + +0.8 362,595 - -0.1 362,891 + ABIE40_RS01835 0.82 +0.5 362,918 - -0.4 362,956 - -1.4 363,184 + ABIE40_RS01840 0.22 -0.4 363,184 + ABIE40_RS01840 0.22 +0.4 363,253 + ABIE40_RS01840 0.29 -0.1 363,253 + ABIE40_RS01840 0.29 +0.0 363,253 + ABIE40_RS01840 0.29 -1.4 363,254 - ABIE40_RS01840 0.30 -1.1 363,254 - ABIE40_RS01840 0.30 -0.2 363,275 + ABIE40_RS01840 0.32 +0.7 363,275 + ABIE40_RS01840 0.32 +0.2 363,275 + ABIE40_RS01840 0.32 -0.0 363,275 + ABIE40_RS01840 0.32 +0.4 363,276 - ABIE40_RS01840 0.32 +0.2 363,276 - ABIE40_RS01840 0.32 -0.6 363,276 - ABIE40_RS01840 0.32 +0.9 363,334 + ABIE40_RS01840 0.38 +1.0 363,334 + ABIE40_RS01840 0.38 +0.6 363,334 + ABIE40_RS01840 0.38 -0.7 363,334 + ABIE40_RS01840 0.38 +0.2 363,334 + ABIE40_RS01840 0.38 -0.0 363,334 + ABIE40_RS01840 0.38 +1.0 363,334 + ABIE40_RS01840 0.38 +0.1 363,334 + ABIE40_RS01840 0.38 +1.1 363,334 + ABIE40_RS01840 0.38 -0.1 363,334 + ABIE40_RS01840 0.38 -1.3 363,335 - ABIE40_RS01840 0.38 -1.8 363,335 - ABIE40_RS01840 0.38 +1.1 363,335 - ABIE40_RS01840 0.38 -0.4 363,335 - ABIE40_RS01840 0.38 +0.3 363,335 - ABIE40_RS01840 0.38 -2.0 363,335 - ABIE40_RS01840 0.38 -0.1 363,335 - ABIE40_RS01840 0.38 -0.3 363,335 - ABIE40_RS01840 0.38 -0.2 363,383 + ABIE40_RS01840 0.43 -1.6 363,384 - ABIE40_RS01840 0.43 +2.1 363,441 + ABIE40_RS01840 0.49 +0.7
Or see this region's nucleotide sequence