Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01055 and ABIE40_RS01060 are separated by 129 nucleotides ABIE40_RS01060 and ABIE40_RS01065 are separated by 17 nucleotides ABIE40_RS01065 and ABIE40_RS01070 are separated by 72 nucleotides
ABIE40_RS01055: ABIE40_RS01055 - translation elongation factor 4, at 212,320 to 214,152
_RS01055
ABIE40_RS01060: ABIE40_RS01060 - XRE family transcriptional regulator, at 214,282 to 214,851
_RS01060
ABIE40_RS01065: ABIE40_RS01065 - GNAT family N-acetyltransferase, at 214,869 to 215,390
_RS01065
ABIE40_RS01070: ABIE40_RS01070 - histone deacetylase family protein, at 215,463 to 216,488
_RS01070
Position (kb) 214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 213.419 kb on + strand, within ABIE40_RS01055 at 213.420 kb on - strand, within ABIE40_RS01055 at 213.420 kb on - strand, within ABIE40_RS01055 at 213.506 kb on + strand, within ABIE40_RS01055 at 213.516 kb on - strand, within ABIE40_RS01055 at 213.907 kb on - strand, within ABIE40_RS01055 at 213.908 kb on + strand, within ABIE40_RS01055 at 213.908 kb on + strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 213.909 kb on - strand, within ABIE40_RS01055 at 214.152 kb on + strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.153 kb on - strand at 214.154 kb on + strand at 214.154 kb on + strand at 214.155 kb on - strand at 214.155 kb on - strand at 214.155 kb on - strand at 214.155 kb on - strand at 214.206 kb on - strand at 214.206 kb on - strand at 214.281 kb on + strand at 214.282 kb on - strand at 214.282 kb on - strand at 214.561 kb on + strand, within ABIE40_RS01060 at 214.562 kb on - strand, within ABIE40_RS01060 at 214.674 kb on + strand, within ABIE40_RS01060 at 214.675 kb on - strand, within ABIE40_RS01060 at 214.675 kb on - strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.686 kb on + strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.687 kb on - strand, within ABIE40_RS01060 at 214.820 kb on - strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.865 kb on + strand at 214.866 kb on - strand at 214.866 kb on - strand at 214.866 kb on - strand at 214.866 kb on - strand at 214.983 kb on + strand, within ABIE40_RS01065 at 214.983 kb on + strand, within ABIE40_RS01065 at 214.983 kb on + strand, within ABIE40_RS01065 at 214.983 kb on + strand, within ABIE40_RS01065 at 214.986 kb on - strand, within ABIE40_RS01065 at 214.986 kb on - strand, within ABIE40_RS01065 at 215.283 kb on + strand, within ABIE40_RS01065 at 215.284 kb on - strand, within ABIE40_RS01065 at 215.284 kb on - strand, within ABIE40_RS01065 at 215.326 kb on - strand, within ABIE40_RS01065 at 215.326 kb on - strand, within ABIE40_RS01065 at 215.370 kb on + strand at 215.475 kb on + strand at 215.520 kb on - strand at 215.690 kb on + strand, within ABIE40_RS01070 at 215.690 kb on + strand, within ABIE40_RS01070 at 215.691 kb on - strand, within ABIE40_RS01070 at 215.691 kb on - strand, within ABIE40_RS01070 at 215.793 kb on + strand, within ABIE40_RS01070 at 215.793 kb on + strand, within ABIE40_RS01070 at 215.794 kb on - strand, within ABIE40_RS01070 at 215.794 kb on - strand, within ABIE40_RS01070 at 215.796 kb on + strand, within ABIE40_RS01070 at 215.797 kb on - strand, within ABIE40_RS01070 at 215.797 kb on - strand, within ABIE40_RS01070 at 215.822 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.835 kb on + strand, within ABIE40_RS01070 at 215.836 kb on - strand, within ABIE40_RS01070 at 215.836 kb on - strand, within ABIE40_RS01070 at 215.836 kb on - strand, within ABIE40_RS01070 at 215.836 kb on - strand, within ABIE40_RS01070 at 215.836 kb on - strand, within ABIE40_RS01070
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 213,419 + ABIE40_RS01055 0.60 -0.4 213,420 - ABIE40_RS01055 0.60 -1.3 213,420 - ABIE40_RS01055 0.60 -1.4 213,506 + ABIE40_RS01055 0.65 -0.9 213,516 - ABIE40_RS01055 0.65 -1.8 213,907 - ABIE40_RS01055 0.87 -1.8 213,908 + ABIE40_RS01055 0.87 -0.7 213,908 + ABIE40_RS01055 0.87 -2.4 213,909 - ABIE40_RS01055 0.87 -0.2 213,909 - ABIE40_RS01055 0.87 -1.9 213,909 - ABIE40_RS01055 0.87 +1.1 213,909 - ABIE40_RS01055 0.87 -0.9 213,909 - ABIE40_RS01055 0.87 -1.8 214,152 + -0.1 214,153 - -0.6 214,153 - +0.6 214,153 - +0.5 214,153 - +0.4 214,153 - +0.3 214,154 + -0.8 214,154 + +0.5 214,155 - -1.1 214,155 - +0.3 214,155 - -0.2 214,155 - -1.9 214,206 - +0.6 214,206 - -0.7 214,281 + -1.3 214,282 - -1.4 214,282 - -0.6 214,561 + ABIE40_RS01060 0.49 +0.0 214,562 - ABIE40_RS01060 0.49 +0.1 214,674 + ABIE40_RS01060 0.69 +1.4 214,675 - ABIE40_RS01060 0.69 -2.1 214,675 - ABIE40_RS01060 0.69 -2.7 214,686 + ABIE40_RS01060 0.71 +0.8 214,686 + ABIE40_RS01060 0.71 +0.4 214,686 + ABIE40_RS01060 0.71 -0.6 214,686 + ABIE40_RS01060 0.71 -0.8 214,686 + ABIE40_RS01060 0.71 -0.2 214,687 - ABIE40_RS01060 0.71 -1.3 214,687 - ABIE40_RS01060 0.71 -0.4 214,687 - ABIE40_RS01060 0.71 -1.3 214,687 - ABIE40_RS01060 0.71 -1.3 214,687 - ABIE40_RS01060 0.71 -1.8 214,687 - ABIE40_RS01060 0.71 -0.1 214,820 - -0.2 214,865 + +5.5 214,865 + -0.2 214,865 + -0.7 214,865 + -1.5 214,865 + +0.0 214,865 + +0.3 214,865 + -1.7 214,866 - +0.1 214,866 - +0.4 214,866 - -1.4 214,866 - -0.7 214,983 + ABIE40_RS01065 0.22 -0.7 214,983 + ABIE40_RS01065 0.22 +0.7 214,983 + ABIE40_RS01065 0.22 -0.5 214,983 + ABIE40_RS01065 0.22 +0.5 214,986 - ABIE40_RS01065 0.22 -0.3 214,986 - ABIE40_RS01065 0.22 -0.1 215,283 + ABIE40_RS01065 0.79 -0.1 215,284 - ABIE40_RS01065 0.80 +0.6 215,284 - ABIE40_RS01065 0.80 -2.8 215,326 - ABIE40_RS01065 0.88 -0.8 215,326 - ABIE40_RS01065 0.88 -0.1 215,370 + -0.2 215,475 + +0.7 215,520 - -1.7 215,690 + ABIE40_RS01070 0.22 +0.5 215,690 + ABIE40_RS01070 0.22 -0.2 215,691 - ABIE40_RS01070 0.22 -0.0 215,691 - ABIE40_RS01070 0.22 -0.8 215,793 + ABIE40_RS01070 0.32 -0.0 215,793 + ABIE40_RS01070 0.32 -0.7 215,794 - ABIE40_RS01070 0.32 +0.7 215,794 - ABIE40_RS01070 0.32 +1.4 215,796 + ABIE40_RS01070 0.32 -0.1 215,797 - ABIE40_RS01070 0.33 -1.6 215,797 - ABIE40_RS01070 0.33 +0.4 215,822 + ABIE40_RS01070 0.35 -0.7 215,835 + ABIE40_RS01070 0.36 -0.2 215,835 + ABIE40_RS01070 0.36 -0.8 215,835 + ABIE40_RS01070 0.36 -0.7 215,835 + ABIE40_RS01070 0.36 +0.3 215,835 + ABIE40_RS01070 0.36 -1.6 215,835 + ABIE40_RS01070 0.36 -0.3 215,835 + ABIE40_RS01070 0.36 -0.7 215,835 + ABIE40_RS01070 0.36 -1.1 215,836 - ABIE40_RS01070 0.36 -0.5 215,836 - ABIE40_RS01070 0.36 +0.1 215,836 - ABIE40_RS01070 0.36 -0.6 215,836 - ABIE40_RS01070 0.36 -0.3 215,836 - ABIE40_RS01070 0.36 +0.2
Or see this region's nucleotide sequence