Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00480 and ABIE40_RS00485 are separated by 2 nucleotides ABIE40_RS00485 and ABIE40_RS00490 are separated by 413 nucleotides ABIE40_RS00490 and ABIE40_RS00495 are separated by 165 nucleotides
ABIE40_RS00480: ABIE40_RS00480 - EAL domain-containing protein, at 96,752 to 99,130
_RS00480
ABIE40_RS00485: ABIE40_RS00485 - MarR family winged helix-turn-helix transcriptional regulator, at 99,133 to 99,549
_RS00485
ABIE40_RS00490: ABIE40_RS00490 - DNA polymerase I, at 99,963 to 102,959
_RS00490
ABIE40_RS00495: ABIE40_RS00495 - DNA translocase FtsK, at 103,125 to 105,557
_RS00495
Position (kb) 99
100
101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 99.065 kb on + strand at 99.065 kb on + strand at 99.065 kb on + strand at 99.065 kb on + strand at 99.065 kb on + strand at 99.065 kb on + strand at 99.066 kb on - strand at 99.066 kb on - strand at 99.066 kb on - strand at 99.066 kb on - strand at 99.066 kb on - strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.534 kb on - strand at 99.534 kb on - strand at 99.570 kb on + strand at 99.570 kb on + strand at 99.570 kb on + strand at 99.570 kb on + strand at 99.570 kb on + strand at 99.570 kb on + strand at 99.574 kb on + strand at 99.574 kb on + strand at 99.575 kb on - strand at 99.575 kb on - strand at 99.651 kb on - strand at 99.651 kb on - strand at 99.660 kb on + strand at 99.661 kb on - strand at 99.661 kb on - strand at 99.665 kb on - strand at 99.739 kb on - strand at 99.871 kb on - strand at 99.880 kb on + strand at 99.880 kb on + strand at 99.880 kb on + strand at 99.881 kb on - strand at 99.881 kb on - strand at 99.923 kb on + strand at 99.923 kb on + strand at 99.923 kb on + strand at 99.924 kb on - strand at 99.924 kb on - strand at 99.924 kb on - strand at 99.924 kb on - strand at 99.925 kb on + strand at 99.925 kb on + strand at 99.925 kb on + strand at 99.925 kb on + strand at 101.094 kb on + strand, within ABIE40_RS00490 at 101.094 kb on + strand, within ABIE40_RS00490 at 101.094 kb on + strand, within ABIE40_RS00490 at 101.095 kb on - strand, within ABIE40_RS00490 at 101.095 kb on - strand, within ABIE40_RS00490 at 101.278 kb on - strand, within ABIE40_RS00490 at 101.424 kb on + strand, within ABIE40_RS00490 at 101.425 kb on - strand, within ABIE40_RS00490 at 101.425 kb on - strand, within ABIE40_RS00490 at 101.425 kb on - strand, within ABIE40_RS00490 at 101.425 kb on - strand, within ABIE40_RS00490 at 101.425 kb on - strand, within ABIE40_RS00490 at 101.431 kb on - strand, within ABIE40_RS00490 at 101.493 kb on + strand, within ABIE40_RS00490 at 101.493 kb on + strand, within ABIE40_RS00490 at 101.493 kb on + strand, within ABIE40_RS00490 at 101.494 kb on - strand, within ABIE40_RS00490 at 101.571 kb on + strand, within ABIE40_RS00490 at 101.594 kb on + strand, within ABIE40_RS00490 at 101.595 kb on - strand, within ABIE40_RS00490 at 101.643 kb on + strand, within ABIE40_RS00490 at 101.643 kb on + strand, within ABIE40_RS00490 at 101.727 kb on + strand, within ABIE40_RS00490 at 101.727 kb on + strand, within ABIE40_RS00490 at 101.727 kb on + strand, within ABIE40_RS00490 at 101.728 kb on - strand, within ABIE40_RS00490 at 101.728 kb on - strand, within ABIE40_RS00490 at 101.728 kb on - strand, within ABIE40_RS00490 at 101.728 kb on - strand, within ABIE40_RS00490 at 101.728 kb on - strand, within ABIE40_RS00490 at 101.728 kb on - strand, within ABIE40_RS00490 at 101.768 kb on + strand, within ABIE40_RS00490 at 101.915 kb on + strand, within ABIE40_RS00490 at 101.938 kb on + strand, within ABIE40_RS00490 at 101.938 kb on + strand, within ABIE40_RS00490 at 101.938 kb on + strand, within ABIE40_RS00490 at 101.938 kb on + strand, within ABIE40_RS00490 at 101.938 kb on + strand, within ABIE40_RS00490 at 101.939 kb on - strand, within ABIE40_RS00490 at 101.939 kb on - strand, within ABIE40_RS00490 at 102.072 kb on + strand, within ABIE40_RS00490 at 102.072 kb on + strand, within ABIE40_RS00490 at 102.072 kb on + strand, within ABIE40_RS00490 at 102.072 kb on + strand, within ABIE40_RS00490 at 102.072 kb on + strand, within ABIE40_RS00490 at 102.073 kb on - strand, within ABIE40_RS00490 at 102.073 kb on - strand, within ABIE40_RS00490 at 102.073 kb on - strand, within ABIE40_RS00490 at 102.073 kb on - strand, within ABIE40_RS00490 at 102.073 kb on - strand, within ABIE40_RS00490 at 102.073 kb on - strand, within ABIE40_RS00490 at 102.074 kb on + strand, within ABIE40_RS00490 at 102.093 kb on + strand, within ABIE40_RS00490 at 102.094 kb on - strand, within ABIE40_RS00490 at 102.094 kb on - strand, within ABIE40_RS00490 at 102.130 kb on - strand, within ABIE40_RS00490 at 102.271 kb on - strand, within ABIE40_RS00490 at 102.271 kb on - strand, within ABIE40_RS00490 at 102.271 kb on - strand, within ABIE40_RS00490 at 102.434 kb on + strand, within ABIE40_RS00490 at 102.450 kb on + strand, within ABIE40_RS00490 at 102.513 kb on + strand, within ABIE40_RS00490 at 102.513 kb on + strand, within ABIE40_RS00490 at 102.513 kb on + strand, within ABIE40_RS00490 at 102.514 kb on - strand, within ABIE40_RS00490 at 102.514 kb on - strand, within ABIE40_RS00490 at 102.514 kb on - strand, within ABIE40_RS00490 at 102.514 kb on - strand, within ABIE40_RS00490 at 102.525 kb on + strand, within ABIE40_RS00490 at 102.525 kb on + strand, within ABIE40_RS00490 at 102.525 kb on + strand, within ABIE40_RS00490 at 102.555 kb on + strand, within ABIE40_RS00490 at 102.555 kb on + strand, within ABIE40_RS00490 at 102.594 kb on + strand, within ABIE40_RS00490 at 102.595 kb on - strand, within ABIE40_RS00490 at 102.595 kb on - strand, within ABIE40_RS00490 at 102.627 kb on + strand, within ABIE40_RS00490 at 102.628 kb on - strand, within ABIE40_RS00490 at 102.731 kb on + strand at 102.767 kb on + strand at 103.067 kb on + strand at 103.067 kb on + strand at 103.067 kb on + strand at 103.067 kb on + strand at 103.085 kb on - strand at 103.102 kb on - strand at 103.124 kb on + strand at 103.124 kb on + strand at 103.125 kb on - strand at 103.125 kb on - strand at 103.125 kb on - strand at 103.338 kb on + strand at 103.338 kb on + strand at 103.338 kb on + strand at 103.338 kb on + strand at 103.338 kb on + strand at 103.338 kb on + strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.658 kb on + strand, within ABIE40_RS00495 at 103.659 kb on - strand, within ABIE40_RS00495 at 103.915 kb on + strand, within ABIE40_RS00495
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 99,065 + +1.1 99,065 + +0.5 99,065 + -0.2 99,065 + +3.0 99,065 + -1.3 99,065 + +0.2 99,066 - -0.1 99,066 - -0.2 99,066 - -0.1 99,066 - +0.1 99,066 - -0.2 99,170 + -0.7 99,170 + +0.2 99,170 + -1.1 99,171 - +1.5 99,171 - -0.1 99,171 - +0.4 99,171 - +0.3 99,171 - -0.6 99,533 + -1.4 99,533 + -1.4 99,533 + -0.4 99,534 - +0.3 99,534 - -1.3 99,570 + -0.6 99,570 + +0.6 99,570 + -2.3 99,570 + +1.0 99,570 + -0.2 99,570 + -3.3 99,574 + +0.4 99,574 + -0.9 99,575 - -0.6 99,575 - -1.0 99,651 - +0.5 99,651 - -0.5 99,660 + +0.4 99,661 - +0.6 99,661 - -0.5 99,665 - +0.2 99,739 - -0.4 99,871 - -0.8 99,880 + -0.5 99,880 + +0.2 99,880 + +0.5 99,881 - -0.2 99,881 - -1.7 99,923 + -0.5 99,923 + +0.9 99,923 + +0.1 99,924 - -0.2 99,924 - -1.5 99,924 - +0.9 99,924 - -1.7 99,925 + +0.5 99,925 + -0.7 99,925 + -0.0 99,925 + +1.9 101,094 + ABIE40_RS00490 0.38 -0.4 101,094 + ABIE40_RS00490 0.38 -3.3 101,094 + ABIE40_RS00490 0.38 +0.4 101,095 - ABIE40_RS00490 0.38 -2.1 101,095 - ABIE40_RS00490 0.38 +0.2 101,278 - ABIE40_RS00490 0.44 -0.7 101,424 + ABIE40_RS00490 0.49 -3.2 101,425 - ABIE40_RS00490 0.49 -0.4 101,425 - ABIE40_RS00490 0.49 -0.9 101,425 - ABIE40_RS00490 0.49 -0.1 101,425 - ABIE40_RS00490 0.49 -0.1 101,425 - ABIE40_RS00490 0.49 -1.5 101,431 - ABIE40_RS00490 0.49 -1.8 101,493 + ABIE40_RS00490 0.51 -0.5 101,493 + ABIE40_RS00490 0.51 +0.9 101,493 + ABIE40_RS00490 0.51 -1.8 101,494 - ABIE40_RS00490 0.51 +0.9 101,571 + ABIE40_RS00490 0.54 -1.6 101,594 + ABIE40_RS00490 0.54 -3.2 101,595 - ABIE40_RS00490 0.54 -0.7 101,643 + ABIE40_RS00490 0.56 -1.1 101,643 + ABIE40_RS00490 0.56 +0.9 101,727 + ABIE40_RS00490 0.59 -3.1 101,727 + ABIE40_RS00490 0.59 -0.5 101,727 + ABIE40_RS00490 0.59 -0.8 101,728 - ABIE40_RS00490 0.59 -2.3 101,728 - ABIE40_RS00490 0.59 -1.6 101,728 - ABIE40_RS00490 0.59 +0.8 101,728 - ABIE40_RS00490 0.59 -1.5 101,728 - ABIE40_RS00490 0.59 +3.5 101,728 - ABIE40_RS00490 0.59 -1.1 101,768 + ABIE40_RS00490 0.60 -0.1 101,915 + ABIE40_RS00490 0.65 -2.3 101,938 + ABIE40_RS00490 0.66 -1.7 101,938 + ABIE40_RS00490 0.66 -1.5 101,938 + ABIE40_RS00490 0.66 -1.5 101,938 + ABIE40_RS00490 0.66 +1.7 101,938 + ABIE40_RS00490 0.66 -2.7 101,939 - ABIE40_RS00490 0.66 -2.6 101,939 - ABIE40_RS00490 0.66 -0.9 102,072 + ABIE40_RS00490 0.70 -1.9 102,072 + ABIE40_RS00490 0.70 +0.9 102,072 + ABIE40_RS00490 0.70 -2.2 102,072 + ABIE40_RS00490 0.70 +0.3 102,072 + ABIE40_RS00490 0.70 +1.3 102,073 - ABIE40_RS00490 0.70 -1.9 102,073 - ABIE40_RS00490 0.70 -2.0 102,073 - ABIE40_RS00490 0.70 -2.5 102,073 - ABIE40_RS00490 0.70 -1.1 102,073 - ABIE40_RS00490 0.70 -0.2 102,073 - ABIE40_RS00490 0.70 -1.3 102,074 + ABIE40_RS00490 0.70 -1.7 102,093 + ABIE40_RS00490 0.71 -2.5 102,094 - ABIE40_RS00490 0.71 -0.3 102,094 - ABIE40_RS00490 0.71 -3.0 102,130 - ABIE40_RS00490 0.72 -1.6 102,271 - ABIE40_RS00490 0.77 +0.8 102,271 - ABIE40_RS00490 0.77 -2.3 102,271 - ABIE40_RS00490 0.77 -3.1 102,434 + ABIE40_RS00490 0.82 -3.1 102,450 + ABIE40_RS00490 0.83 -1.3 102,513 + ABIE40_RS00490 0.85 -1.0 102,513 + ABIE40_RS00490 0.85 -1.5 102,513 + ABIE40_RS00490 0.85 -0.2 102,514 - ABIE40_RS00490 0.85 -2.6 102,514 - ABIE40_RS00490 0.85 -1.0 102,514 - ABIE40_RS00490 0.85 -1.1 102,514 - ABIE40_RS00490 0.85 +1.9 102,525 + ABIE40_RS00490 0.85 -1.7 102,525 + ABIE40_RS00490 0.85 -1.5 102,525 + ABIE40_RS00490 0.85 -0.5 102,555 + ABIE40_RS00490 0.86 -0.7 102,555 + ABIE40_RS00490 0.86 +1.9 102,594 + ABIE40_RS00490 0.88 +0.9 102,595 - ABIE40_RS00490 0.88 +0.0 102,595 - ABIE40_RS00490 0.88 -1.1 102,627 + ABIE40_RS00490 0.89 -2.0 102,628 - ABIE40_RS00490 0.89 -3.5 102,731 + +0.3 102,767 + -0.9 103,067 + +0.7 103,067 + +0.2 103,067 + -0.9 103,067 + +0.9 103,085 - +0.1 103,102 - -1.1 103,124 + -1.8 103,124 + -0.4 103,125 - -0.5 103,125 - -0.6 103,125 - -1.0 103,338 + +0.3 103,338 + +0.4 103,338 + +1.1 103,338 + +0.7 103,338 + +0.6 103,338 + +0.4 103,339 - -1.0 103,339 - +0.2 103,658 + ABIE40_RS00495 0.22 +0.9 103,659 - ABIE40_RS00495 0.22 -0.3 103,915 + ABIE40_RS00495 0.32 -0.7
Or see this region's nucleotide sequence