Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28905 and ABID97_RS28910 are separated by 112 nucleotides ABID97_RS28910 and ABID97_RS28915 overlap by 4 nucleotides ABID97_RS28915 and ABID97_RS28920 are separated by 357 nucleotides
ABID97_RS28905: ABID97_RS28905 - LysR substrate-binding domain-containing protein, at 699,769 to 700,680
_RS28905
ABID97_RS28910: ABID97_RS28910 - phage integrase family protein, at 700,793 to 702,682
_RS28910
ABID97_RS28915: ABID97_RS28915 - hypothetical protein, at 702,679 to 702,939
_RS28915
ABID97_RS28920: ABID97_RS28920 - hypothetical protein, at 703,297 to 703,527
_RS28920
Position (kb) 700
701
702
703 Strain fitness (log2 ratio) -2
-1
0
1 at 699.968 kb on - strand, within ABID97_RS28905 at 699.968 kb on - strand, within ABID97_RS28905 at 700.249 kb on + strand, within ABID97_RS28905 at 700.275 kb on - strand, within ABID97_RS28905 at 700.435 kb on - strand, within ABID97_RS28905 at 700.725 kb on + strand at 700.725 kb on + strand at 700.726 kb on - strand at 700.756 kb on + strand at 700.756 kb on + strand at 700.757 kb on - strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 701.337 kb on + strand, within ABID97_RS28910 at 701.508 kb on + strand, within ABID97_RS28910 at 701.509 kb on - strand, within ABID97_RS28910 at 701.509 kb on - strand, within ABID97_RS28910 at 701.509 kb on - strand at 702.354 kb on + strand, within ABID97_RS28910 at 702.355 kb on - strand, within ABID97_RS28910 at 702.355 kb on - strand, within ABID97_RS28910 at 702.355 kb on - strand, within ABID97_RS28910 at 702.585 kb on + strand at 703.158 kb on + strand at 703.247 kb on + strand at 703.247 kb on + strand at 703.248 kb on - strand at 703.549 kb on + strand at 703.549 kb on + strand at 703.549 kb on + strand at 703.549 kb on + strand at 703.549 kb on + strand at 703.550 kb on - strand at 703.550 kb on - strand at 703.550 kb on - strand at 703.550 kb on - strand at 703.550 kb on - strand at 703.551 kb on + strand at 703.552 kb on - strand at 703.552 kb on - strand at 703.552 kb on - strand at 703.552 kb on - strand at 703.552 kb on - strand at 703.552 kb on - strand at 703.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 699,968 - ABID97_RS28905 0.22 +0.2 699,968 - ABID97_RS28905 0.22 +0.8 700,249 + ABID97_RS28905 0.53 -0.2 700,275 - ABID97_RS28905 0.55 -0.4 700,435 - ABID97_RS28905 0.73 -1.3 700,725 + -0.0 700,725 + -0.3 700,726 - +0.2 700,756 + +0.5 700,756 + +0.4 700,757 - -0.3 700,845 + +0.2 700,845 + +1.1 700,845 + +0.9 700,846 - +0.4 700,846 - +0.9 700,846 - +0.1 700,846 - +0.3 700,846 - -0.6 700,846 - +0.8 701,337 + ABID97_RS28910 0.29 +1.0 701,508 + ABID97_RS28910 0.38 -0.1 701,509 - ABID97_RS28910 0.38 +0.2 701,509 - ABID97_RS28910 0.38 +1.1 701,509 - +1.2 702,354 + ABID97_RS28910 0.83 +0.1 702,355 - ABID97_RS28910 0.83 +1.6 702,355 - ABID97_RS28910 0.83 +1.2 702,355 - ABID97_RS28910 0.83 +0.6 702,585 + -0.6 703,158 + -0.6 703,247 + +0.2 703,247 + -1.4 703,248 - +0.3 703,549 + +0.0 703,549 + -2.1 703,549 + +0.6 703,549 + +0.6 703,549 + +0.1 703,550 - +0.0 703,550 - +0.0 703,550 - -0.7 703,550 - +0.1 703,550 - +0.3 703,551 + -0.0 703,552 - -0.7 703,552 - -0.4 703,552 - +0.5 703,552 - +0.3 703,552 - -0.1 703,552 - -1.4 703,552 - -1.7
Or see this region's nucleotide sequence