Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28890 and ABID97_RS28895 are separated by 18 nucleotides ABID97_RS28895 and ABID97_RS28900 are separated by 44 nucleotides ABID97_RS28900 and ABID97_RS28905 are separated by 126 nucleotides
ABID97_RS28890: ABID97_RS28890 - citryl-CoA lyase, at 696,698 to 697,504
_RS28890
ABID97_RS28895: ABID97_RS28895 - dioxygenase, at 697,523 to 698,440
_RS28895
ABID97_RS28900: ABID97_RS28900 - CoA transferase, at 698,485 to 699,642
_RS28900
ABID97_RS28905: ABID97_RS28905 - LysR substrate-binding domain-containing protein, at 699,769 to 700,680
_RS28905
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1 at 697.554 kb on + strand at 697.555 kb on - strand at 697.674 kb on + strand, within ABID97_RS28895 at 697.675 kb on - strand, within ABID97_RS28895 at 697.818 kb on + strand, within ABID97_RS28895 at 697.819 kb on - strand, within ABID97_RS28895 at 698.705 kb on + strand, within ABID97_RS28900 at 698.705 kb on + strand, within ABID97_RS28900 at 698.705 kb on + strand, within ABID97_RS28900 at 698.706 kb on - strand, within ABID97_RS28900 at 698.954 kb on + strand, within ABID97_RS28900 at 698.954 kb on + strand, within ABID97_RS28900 at 698.955 kb on - strand, within ABID97_RS28900 at 698.955 kb on - strand, within ABID97_RS28900 at 699.131 kb on + strand, within ABID97_RS28900 at 699.132 kb on - strand, within ABID97_RS28900 at 699.132 kb on - strand, within ABID97_RS28900 at 699.132 kb on - strand, within ABID97_RS28900 at 699.290 kb on + strand, within ABID97_RS28900 at 699.291 kb on - strand, within ABID97_RS28900 at 699.291 kb on - strand, within ABID97_RS28900 at 699.374 kb on + strand, within ABID97_RS28900 at 699.375 kb on - strand, within ABID97_RS28900 at 699.464 kb on + strand, within ABID97_RS28900 at 699.485 kb on + strand, within ABID97_RS28900 at 699.486 kb on - strand, within ABID97_RS28900 at 699.687 kb on + strand at 699.687 kb on + strand at 699.687 kb on + strand at 699.687 kb on + strand at 699.687 kb on + strand at 699.688 kb on - strand at 699.688 kb on - strand at 699.688 kb on - strand at 699.688 kb on - strand at 699.688 kb on - strand at 699.968 kb on - strand, within ABID97_RS28905 at 699.968 kb on - strand, within ABID97_RS28905 at 700.249 kb on + strand, within ABID97_RS28905 at 700.275 kb on - strand, within ABID97_RS28905 at 700.435 kb on - strand, within ABID97_RS28905
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 697,554 + -0.3 697,555 - +0.3 697,674 + ABID97_RS28895 0.16 +1.0 697,675 - ABID97_RS28895 0.17 -0.4 697,818 + ABID97_RS28895 0.32 -0.4 697,819 - ABID97_RS28895 0.32 -0.6 698,705 + ABID97_RS28900 0.19 -0.5 698,705 + ABID97_RS28900 0.19 +0.4 698,705 + ABID97_RS28900 0.19 -0.3 698,706 - ABID97_RS28900 0.19 +0.1 698,954 + ABID97_RS28900 0.41 +0.8 698,954 + ABID97_RS28900 0.41 +0.1 698,955 - ABID97_RS28900 0.41 -0.2 698,955 - ABID97_RS28900 0.41 -2.7 699,131 + ABID97_RS28900 0.56 +1.3 699,132 - ABID97_RS28900 0.56 -0.2 699,132 - ABID97_RS28900 0.56 -1.0 699,132 - ABID97_RS28900 0.56 +0.2 699,290 + ABID97_RS28900 0.70 +0.2 699,291 - ABID97_RS28900 0.70 +0.2 699,291 - ABID97_RS28900 0.70 -0.4 699,374 + ABID97_RS28900 0.77 +0.4 699,375 - ABID97_RS28900 0.77 -0.4 699,464 + ABID97_RS28900 0.85 -1.5 699,485 + ABID97_RS28900 0.86 -1.4 699,486 - ABID97_RS28900 0.86 +0.6 699,687 + -0.5 699,687 + -1.4 699,687 + -0.4 699,687 + +1.3 699,687 + +0.6 699,688 - -0.3 699,688 - -0.3 699,688 - +0.4 699,688 - +0.2 699,688 - -0.0 699,968 - ABID97_RS28905 0.22 +0.2 699,968 - ABID97_RS28905 0.22 +0.8 700,249 + ABID97_RS28905 0.53 -0.2 700,275 - ABID97_RS28905 0.55 -0.4 700,435 - ABID97_RS28905 0.73 -1.3
Or see this region's nucleotide sequence