Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28785 and ABID97_RS28790 are separated by 76 nucleotides ABID97_RS28790 and ABID97_RS28795 are separated by 209 nucleotides ABID97_RS28795 and ABID97_RS28800 are separated by 9 nucleotides
ABID97_RS28785: ABID97_RS28785 - ABC transporter substrate-binding protein, at 675,176 to 675,985
_RS28785
ABID97_RS28790: ABID97_RS28790 - ABC transporter substrate-binding protein, at 676,062 to 676,388
_RS28790
ABID97_RS28795: ABID97_RS28795 - SMP-30/gluconolactonase/LRE family protein, at 676,598 to 677,473
_RS28795
ABID97_RS28800: ABID97_RS28800 - 3-keto-5-aminohexanoate cleavage protein, at 677,483 to 678,415
_RS28800
Position (kb) 676
677
678 Strain fitness (log2 ratio) -1
0
1 at 676.030 kb on + strand at 676.087 kb on + strand at 676.574 kb on + strand at 676.722 kb on + strand, within ABID97_RS28795 at 676.959 kb on + strand, within ABID97_RS28795 at 676.959 kb on + strand, within ABID97_RS28795 at 676.960 kb on - strand, within ABID97_RS28795 at 676.966 kb on - strand, within ABID97_RS28795 at 676.966 kb on - strand, within ABID97_RS28795 at 677.002 kb on - strand, within ABID97_RS28795 at 677.394 kb on + strand at 677.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 676,030 + +0.6 676,087 + +0.1 676,574 + -0.4 676,722 + ABID97_RS28795 0.14 +0.0 676,959 + ABID97_RS28795 0.41 -0.6 676,959 + ABID97_RS28795 0.41 +0.2 676,960 - ABID97_RS28795 0.41 -0.4 676,966 - ABID97_RS28795 0.42 -0.5 676,966 - ABID97_RS28795 0.42 -0.4 677,002 - ABID97_RS28795 0.46 +0.7 677,394 + -0.7 677,485 - +0.2
Or see this region's nucleotide sequence