Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28485

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28475 and ABID97_RS28480 are separated by 27 nucleotidesABID97_RS28480 and ABID97_RS28485 are separated by 1 nucleotidesABID97_RS28485 and ABID97_RS28490 overlap by 4 nucleotidesABID97_RS28490 and ABID97_RS28495 overlap by 4 nucleotides ABID97_RS28475: ABID97_RS28475 - LysR family transcriptional regulator, at 615,226 to 616,131 _RS28475 ABID97_RS28480: ABID97_RS28480 - isochorismatase family protein, at 616,159 to 616,869 _RS28480 ABID97_RS28485: ABID97_RS28485 - FAD-dependent monooxygenase, at 616,871 to 618,091 _RS28485 ABID97_RS28490: ABID97_RS28490 - (2Fe-2S)-binding protein, at 618,088 to 618,600 _RS28490 ABID97_RS28495: ABID97_RS28495 - FAD binding domain-containing protein, at 618,597 to 619,460 _RS28495 Position (kb) 616 617 618 619Strain fitness (log2 ratio) -2 -1 0 1at 615.936 kb on - strand, within ABID97_RS28475at 615.964 kb on + strand, within ABID97_RS28475at 615.968 kb on + strand, within ABID97_RS28475at 615.969 kb on - strand, within ABID97_RS28475at 618.165 kb on + strand, within ABID97_RS28490at 618.558 kb on + strandat 618.559 kb on - strandat 618.559 kb on - strandat 618.954 kb on + strand, within ABID97_RS28495

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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615,936 - ABID97_RS28475 0.78 +0.1
615,964 + ABID97_RS28475 0.81 +0.9
615,968 + ABID97_RS28475 0.82 -0.8
615,969 - ABID97_RS28475 0.82 +0.1
618,165 + ABID97_RS28490 0.15 -1.9
618,558 + +1.0
618,559 - -0.2
618,559 - -0.8
618,954 + ABID97_RS28495 0.41 -0.4

Or see this region's nucleotide sequence