Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28420 and ABID97_RS28425 are separated by 176 nucleotides ABID97_RS28425 and ABID97_RS28430 are separated by 10 nucleotides ABID97_RS28430 and ABID97_RS28435 are separated by 4 nucleotides ABID97_RS28435 and ABID97_RS28440 are separated by 187 nucleotides
ABID97_RS28420: ABID97_RS28420 - tripartite tricarboxylate transporter substrate binding protein, at 604,003 to 604,821
_RS28420
ABID97_RS28425: ABID97_RS28425 - SDR family NAD(P)-dependent oxidoreductase, at 604,998 to 605,777
_RS28425
ABID97_RS28430: ABID97_RS28430 - thiolase family protein, at 605,788 to 606,924
_RS28430
ABID97_RS28435: ABID97_RS28435 - OB-fold domain-containing protein, at 606,929 to 607,285
_RS28435
ABID97_RS28440: ABID97_RS28440 - PrpF domain-containing protein, at 607,473 to 608,618
_RS28440
Position (kb) 605
606
607 Strain fitness (log2 ratio) -1
0
1 at 604.999 kb on + strand at 605.059 kb on + strand at 605.293 kb on + strand, within ABID97_RS28425 at 605.802 kb on + strand at 605.803 kb on - strand at 606.081 kb on - strand, within ABID97_RS28430 at 606.454 kb on - strand, within ABID97_RS28430 at 607.120 kb on - strand, within ABID97_RS28435 at 607.405 kb on + strand at 607.406 kb on - strand at 607.463 kb on + strand at 607.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 604,999 + -0.1 605,059 + +0.1 605,293 + ABID97_RS28425 0.38 +0.1 605,802 + -0.8 605,803 - +0.0 606,081 - ABID97_RS28430 0.26 -0.6 606,454 - ABID97_RS28430 0.59 -0.1 607,120 - ABID97_RS28435 0.54 +0.6 607,405 + -0.6 607,406 - +0.0 607,463 + -0.7 607,487 - +0.5
Or see this region's nucleotide sequence