Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27645

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27635 and ABID97_RS27640 are separated by 10 nucleotidesABID97_RS27640 and ABID97_RS27645 are separated by 23 nucleotidesABID97_RS27645 and ABID97_RS27650 are separated by 14 nucleotidesABID97_RS27650 and ABID97_RS27655 overlap by 4 nucleotides ABID97_RS27635: ABID97_RS27635 - NAD(P)H-dependent oxidoreductase, at 446,609 to 447,427 _RS27635 ABID97_RS27640: ABID97_RS27640 - VOC family protein, at 447,438 to 447,902 _RS27640 ABID97_RS27645: ABID97_RS27645 - RraA family protein, at 447,926 to 448,612 _RS27645 ABID97_RS27650: ABID97_RS27650 - tripartite tricarboxylate transporter substrate binding protein, at 448,627 to 449,613 _RS27650 ABID97_RS27655: ABID97_RS27655 - pyridoxal phosphate-dependent aminotransferase, at 449,610 to 450,839 _RS27655 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2 3at 447.186 kb on + strand, within ABID97_RS27635at 447.927 kb on + strandat 449.049 kb on - strand, within ABID97_RS27650at 449.222 kb on + strand, within ABID97_RS27650at 449.222 kb on + strand, within ABID97_RS27650at 449.231 kb on + strand, within ABID97_RS27650at 449.231 kb on + strand, within ABID97_RS27650at 449.232 kb on - strand, within ABID97_RS27650

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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447,186 + ABID97_RS27635 0.70 -2.4
447,927 + +0.3
449,049 - ABID97_RS27650 0.43 +0.7
449,222 + ABID97_RS27650 0.60 -0.7
449,222 + ABID97_RS27650 0.60 +3.1
449,231 + ABID97_RS27650 0.61 -0.7
449,231 + ABID97_RS27650 0.61 +0.4
449,232 - ABID97_RS27650 0.61 -0.3

Or see this region's nucleotide sequence