Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27395 and ABID97_RS27400 are separated by 157 nucleotides ABID97_RS27400 and ABID97_RS27405 are separated by 49 nucleotides ABID97_RS27405 and ABID97_RS27410 are separated by 3 nucleotides ABID97_RS27410 and ABID97_RS27415 are separated by 80 nucleotides
ABID97_RS27395: ABID97_RS27395 - 5-oxoprolinase subunit PxpA, at 396,131 to 396,895
_RS27395
ABID97_RS27400: ABID97_RS27400 - SDR family oxidoreductase, at 397,053 to 397,805
_RS27400
ABID97_RS27405: ABID97_RS27405 - amino acid ABC transporter permease, at 397,855 to 398,556
_RS27405
ABID97_RS27410: ABID97_RS27410 - amino acid ABC transporter permease, at 398,560 to 399,318
_RS27410
ABID97_RS27415: ABID97_RS27415 - amino acid ABC transporter ATP-binding protein, at 399,399 to 400,133
_RS27415
Position (kb) 397
398
399 Strain fitness (log2 ratio) -1
0
1 at 396.911 kb on + strand at 396.917 kb on - strand at 396.946 kb on - strand at 397.004 kb on - strand at 397.485 kb on + strand, within ABID97_RS27400 at 398.038 kb on + strand, within ABID97_RS27405 at 398.197 kb on + strand, within ABID97_RS27405 at 398.198 kb on - strand, within ABID97_RS27405 at 398.278 kb on + strand, within ABID97_RS27405 at 398.279 kb on - strand, within ABID97_RS27405 at 398.555 kb on - strand at 398.764 kb on + strand, within ABID97_RS27410 at 398.894 kb on - strand, within ABID97_RS27410 at 399.178 kb on + strand, within ABID97_RS27410 at 399.179 kb on - strand, within ABID97_RS27410 at 399.179 kb on - strand, within ABID97_RS27410 at 399.179 kb on - strand, within ABID97_RS27410 at 399.182 kb on - strand, within ABID97_RS27410 at 399.182 kb on - strand, within ABID97_RS27410
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 396,911 + -0.6 396,917 - -0.3 396,946 - +0.2 397,004 - -0.2 397,485 + ABID97_RS27400 0.57 -1.7 398,038 + ABID97_RS27405 0.26 +0.5 398,197 + ABID97_RS27405 0.49 -0.4 398,198 - ABID97_RS27405 0.49 +0.7 398,278 + ABID97_RS27405 0.60 +0.3 398,279 - ABID97_RS27405 0.60 -0.0 398,555 - -0.0 398,764 + ABID97_RS27410 0.27 -1.1 398,894 - ABID97_RS27410 0.44 -0.6 399,178 + ABID97_RS27410 0.81 -0.2 399,179 - ABID97_RS27410 0.82 +0.1 399,179 - ABID97_RS27410 0.82 -0.5 399,179 - ABID97_RS27410 0.82 -0.5 399,182 - ABID97_RS27410 0.82 -0.6 399,182 - ABID97_RS27410 0.82 -0.5
Or see this region's nucleotide sequence