Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27115 and ABID97_RS27120 are separated by 14 nucleotides ABID97_RS27120 and ABID97_RS27125 are separated by 24 nucleotides ABID97_RS27125 and ABID97_RS27130 are separated by 170 nucleotides
ABID97_RS27115: ABID97_RS27115 - hypothetical protein, at 340,697 to 341,002
_RS27115
ABID97_RS27120: ABID97_RS27120 - hypothetical protein, at 341,017 to 341,643
_RS27120
ABID97_RS27125: ABID97_RS27125 - AraC family transcriptional regulator ligand-binding domain-containing protein, at 341,668 to 342,744
_RS27125
ABID97_RS27130: ABID97_RS27130 - ATP-binding protein, at 342,915 to 344,483
_RS27130
Position (kb) 341
342
343 Strain fitness (log2 ratio) -1
0
1 at 340.712 kb on + strand at 341.401 kb on + strand, within ABID97_RS27120 at 341.401 kb on + strand, within ABID97_RS27120 at 341.479 kb on + strand, within ABID97_RS27120 at 341.479 kb on + strand, within ABID97_RS27120 at 341.479 kb on + strand, within ABID97_RS27120 at 341.480 kb on - strand, within ABID97_RS27120 at 341.480 kb on - strand at 341.670 kb on - strand at 342.492 kb on - strand, within ABID97_RS27125 at 342.702 kb on - strand at 342.916 kb on + strand at 342.917 kb on - strand at 343.142 kb on - strand, within ABID97_RS27130
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 340,712 + -1.3 341,401 + ABID97_RS27120 0.61 +1.6 341,401 + ABID97_RS27120 0.61 +0.9 341,479 + ABID97_RS27120 0.74 -0.1 341,479 + ABID97_RS27120 0.74 -0.5 341,479 + ABID97_RS27120 0.74 +0.3 341,480 - ABID97_RS27120 0.74 +0.3 341,480 - +0.1 341,670 - -0.0 342,492 - ABID97_RS27125 0.77 +0.2 342,702 - +0.1 342,916 + +0.8 342,917 - +0.2 343,142 - ABID97_RS27130 0.14 +0.1
Or see this region's nucleotide sequence