Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25970

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25965 and ABID97_RS25970 are separated by 14 nucleotidesABID97_RS25970 and ABID97_RS25975 overlap by 4 nucleotides ABID97_RS25965: ABID97_RS25965 - MaoC family dehydratase, at 116,181 to 117,266 _RS25965 ABID97_RS25970: ABID97_RS25970 - MaoC family dehydratase N-terminal domain-containing protein, at 117,281 to 118,147 _RS25970 ABID97_RS25975: ABID97_RS25975 - CoA transferase, at 118,144 to 119,379 _RS25975 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1at 116.477 kb on - strand, within ABID97_RS25965at 116.515 kb on + strand, within ABID97_RS25965at 116.894 kb on - strand, within ABID97_RS25965at 117.386 kb on - strand, within ABID97_RS25970at 117.906 kb on - strand, within ABID97_RS25970at 118.366 kb on + strand, within ABID97_RS25975at 118.707 kb on - strand, within ABID97_RS25975at 118.874 kb on + strand, within ABID97_RS25975at 118.953 kb on - strand, within ABID97_RS25975

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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116,477 - ABID97_RS25965 0.27 +1.0
116,515 + ABID97_RS25965 0.31 +1.1
116,894 - ABID97_RS25965 0.66 -0.6
117,386 - ABID97_RS25970 0.12 -3.5
117,906 - ABID97_RS25970 0.72 -0.2
118,366 + ABID97_RS25975 0.18 +0.8
118,707 - ABID97_RS25975 0.46 +0.0
118,874 + ABID97_RS25975 0.59 -0.3
118,953 - ABID97_RS25975 0.65 -0.4

Or see this region's nucleotide sequence