Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25770

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25765 and ABID97_RS25770 overlap by 4 nucleotidesABID97_RS25770 and ABID97_RS25775 overlap by 4 nucleotides ABID97_RS25765: ABID97_RS25765 - homoserine kinase, at 73,125 to 74,126 _RS25765 ABID97_RS25770: ABID97_RS25770 - glycine C-acetyltransferase, at 74,123 to 75,325 _RS25770 ABID97_RS25775: ABID97_RS25775 - NAD-dependent epimerase/dehydratase family protein, at 75,322 to 76,308 _RS25775 Position (kb) 74 75 76Strain fitness (log2 ratio) -1 0 1at 73.239 kb on + strand, within ABID97_RS25765at 73.240 kb on - strand, within ABID97_RS25765at 73.240 kb on - strand, within ABID97_RS25765at 73.315 kb on - strand, within ABID97_RS25765at 74.282 kb on + strand, within ABID97_RS25770at 75.198 kb on - strand, within ABID97_RS25770at 75.538 kb on + strand, within ABID97_RS25775at 75.748 kb on + strand, within ABID97_RS25775at 75.748 kb on + strand, within ABID97_RS25775at 75.880 kb on + strand, within ABID97_RS25775at 75.922 kb on + strand, within ABID97_RS25775at 75.922 kb on + strand, within ABID97_RS25775at 75.923 kb on - strand, within ABID97_RS25775at 76.040 kb on - strand, within ABID97_RS25775at 76.040 kb on - strand, within ABID97_RS25775at 76.089 kb on - strand, within ABID97_RS25775at 76.121 kb on - strand, within ABID97_RS25775at 76.121 kb on - strand, within ABID97_RS25775

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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73,239 + ABID97_RS25765 0.11 -0.2
73,240 - ABID97_RS25765 0.11 +0.2
73,240 - ABID97_RS25765 0.11 +0.8
73,315 - ABID97_RS25765 0.19 -0.7
74,282 + ABID97_RS25770 0.13 -0.8
75,198 - ABID97_RS25770 0.89 -0.5
75,538 + ABID97_RS25775 0.22 -0.3
75,748 + ABID97_RS25775 0.43 +0.2
75,748 + ABID97_RS25775 0.43 -0.5
75,880 + ABID97_RS25775 0.57 +0.9
75,922 + ABID97_RS25775 0.61 +0.1
75,922 + ABID97_RS25775 0.61 +0.6
75,923 - ABID97_RS25775 0.61 +0.1
76,040 - ABID97_RS25775 0.73 -1.1
76,040 - ABID97_RS25775 0.73 +0.3
76,089 - ABID97_RS25775 0.78 -0.1
76,121 - ABID97_RS25775 0.81 +0.4
76,121 - ABID97_RS25775 0.81 -0.5

Or see this region's nucleotide sequence