Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25460 and ABID97_RS25465 overlap by 1 nucleotides ABID97_RS25465 and ABID97_RS25470 are separated by 9 nucleotides ABID97_RS25470 and ABID97_RS25475 are separated by 219 nucleotides
ABID97_RS25460: ABID97_RS25460 - YciI family protein, at 10,826 to 11,206
_RS25460
ABID97_RS25465: ABID97_RS25465 - VOC family protein, at 11,206 to 12,132
_RS25465
ABID97_RS25470: ABID97_RS25470 - NIPSNAP family protein, at 12,142 to 12,456
_RS25470
ABID97_RS25475: ABID97_RS25475 - LysR family transcriptional regulator, at 12,676 to 13,569
_RS25475
Position (kb) 12
13 Strain fitness (log2 ratio) -1
0
1
2
3 at 11.146 kb on - strand, within ABID97_RS25460 at 11.390 kb on + strand, within ABID97_RS25465 at 11.391 kb on - strand, within ABID97_RS25465 at 11.631 kb on - strand, within ABID97_RS25465 at 11.954 kb on + strand, within ABID97_RS25465 at 11.954 kb on + strand, within ABID97_RS25465 at 11.955 kb on - strand, within ABID97_RS25465 at 12.068 kb on + strand at 12.068 kb on + strand at 12.434 kb on + strand at 12.434 kb on + strand at 12.434 kb on + strand at 12.435 kb on - strand at 13.071 kb on - strand, within ABID97_RS25475 at 13.440 kb on - strand, within ABID97_RS25475
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 11,146 - ABID97_RS25460 0.84 +3.0 11,390 + ABID97_RS25465 0.20 +0.0 11,391 - ABID97_RS25465 0.20 -0.5 11,631 - ABID97_RS25465 0.46 -0.3 11,954 + ABID97_RS25465 0.81 +0.3 11,954 + ABID97_RS25465 0.81 +0.4 11,955 - ABID97_RS25465 0.81 -0.9 12,068 + +0.6 12,068 + +0.4 12,434 + +0.4 12,434 + -0.9 12,434 + +0.2 12,435 - +2.2 13,071 - ABID97_RS25475 0.44 -0.4 13,440 - ABID97_RS25475 0.85 +0.4
Or see this region's nucleotide sequence