Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25455

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25450 and ABID97_RS25455 are separated by 168 nucleotidesABID97_RS25455 and ABID97_RS25460 are separated by 60 nucleotidesABID97_RS25460 and ABID97_RS25465 overlap by 1 nucleotides ABID97_RS25450: ABID97_RS25450 - porin, at 8,222 to 9,427 _RS25450 ABID97_RS25455: ABID97_RS25455 - ABC transporter substrate-binding protein, at 9,596 to 10,765 _RS25455 ABID97_RS25460: ABID97_RS25460 - YciI family protein, at 10,826 to 11,206 _RS25460 ABID97_RS25465: ABID97_RS25465 - VOC family protein, at 11,206 to 12,132 _RS25465 Position (kb) 9 10 11Strain fitness (log2 ratio) -1 0 1 2 3at 8.700 kb on + strand, within ABID97_RS25450at 8.701 kb on - strand, within ABID97_RS25450at 8.889 kb on + strand, within ABID97_RS25450at 8.889 kb on + strand, within ABID97_RS25450at 9.213 kb on + strand, within ABID97_RS25450at 9.214 kb on - strand, within ABID97_RS25450at 9.402 kb on - strandat 9.597 kb on + strandat 9.598 kb on - strandat 9.621 kb on + strandat 9.622 kb on - strandat 9.711 kb on + strandat 9.712 kb on - strandat 9.712 kb on - strandat 9.864 kb on + strand, within ABID97_RS25455at 10.039 kb on - strand, within ABID97_RS25455at 10.191 kb on + strand, within ABID97_RS25455at 10.192 kb on - strand, within ABID97_RS25455at 10.218 kb on + strand, within ABID97_RS25455at 10.218 kb on + strand, within ABID97_RS25455at 10.219 kb on - strand, within ABID97_RS25455at 10.219 kb on - strand, within ABID97_RS25455at 10.308 kb on + strand, within ABID97_RS25455at 11.146 kb on - strand, within ABID97_RS25460at 11.390 kb on + strand, within ABID97_RS25465at 11.391 kb on - strand, within ABID97_RS25465at 11.631 kb on - strand, within ABID97_RS25465

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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8,700 + ABID97_RS25450 0.40 -0.6
8,701 - ABID97_RS25450 0.40 -0.3
8,889 + ABID97_RS25450 0.55 -0.2
8,889 + ABID97_RS25450 0.55 +1.3
9,213 + ABID97_RS25450 0.82 -1.0
9,214 - ABID97_RS25450 0.82 +0.3
9,402 - +0.3
9,597 + -0.9
9,598 - -0.6
9,621 + -0.7
9,622 - -0.7
9,711 + +0.2
9,712 - -0.1
9,712 - +0.0
9,864 + ABID97_RS25455 0.23 -0.8
10,039 - ABID97_RS25455 0.38 -0.4
10,191 + ABID97_RS25455 0.51 +0.2
10,192 - ABID97_RS25455 0.51 +0.7
10,218 + ABID97_RS25455 0.53 -0.9
10,218 + ABID97_RS25455 0.53 -0.1
10,219 - ABID97_RS25455 0.53 -1.4
10,219 - ABID97_RS25455 0.53 +1.2
10,308 + ABID97_RS25455 0.61 -0.8
11,146 - ABID97_RS25460 0.84 +3.0
11,390 + ABID97_RS25465 0.20 +0.0
11,391 - ABID97_RS25465 0.20 -0.5
11,631 - ABID97_RS25465 0.46 -0.3

Or see this region's nucleotide sequence