Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25450 and ABID97_RS25455 are separated by 168 nucleotides ABID97_RS25455 and ABID97_RS25460 are separated by 60 nucleotides ABID97_RS25460 and ABID97_RS25465 overlap by 1 nucleotides
ABID97_RS25450: ABID97_RS25450 - porin, at 8,222 to 9,427
_RS25450
ABID97_RS25455: ABID97_RS25455 - ABC transporter substrate-binding protein, at 9,596 to 10,765
_RS25455
ABID97_RS25460: ABID97_RS25460 - YciI family protein, at 10,826 to 11,206
_RS25460
ABID97_RS25465: ABID97_RS25465 - VOC family protein, at 11,206 to 12,132
_RS25465
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-1
0
1
2
3 at 8.700 kb on + strand, within ABID97_RS25450 at 8.701 kb on - strand, within ABID97_RS25450 at 8.889 kb on + strand, within ABID97_RS25450 at 8.889 kb on + strand, within ABID97_RS25450 at 9.213 kb on + strand, within ABID97_RS25450 at 9.214 kb on - strand, within ABID97_RS25450 at 9.402 kb on - strand at 9.597 kb on + strand at 9.598 kb on - strand at 9.621 kb on + strand at 9.622 kb on - strand at 9.711 kb on + strand at 9.712 kb on - strand at 9.712 kb on - strand at 9.864 kb on + strand, within ABID97_RS25455 at 10.039 kb on - strand, within ABID97_RS25455 at 10.191 kb on + strand, within ABID97_RS25455 at 10.192 kb on - strand, within ABID97_RS25455 at 10.218 kb on + strand, within ABID97_RS25455 at 10.218 kb on + strand, within ABID97_RS25455 at 10.219 kb on - strand, within ABID97_RS25455 at 10.219 kb on - strand, within ABID97_RS25455 at 10.308 kb on + strand, within ABID97_RS25455 at 11.146 kb on - strand, within ABID97_RS25460 at 11.390 kb on + strand, within ABID97_RS25465 at 11.391 kb on - strand, within ABID97_RS25465 at 11.631 kb on - strand, within ABID97_RS25465
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 8,700 + ABID97_RS25450 0.40 -0.6 8,701 - ABID97_RS25450 0.40 -0.3 8,889 + ABID97_RS25450 0.55 -0.2 8,889 + ABID97_RS25450 0.55 +1.3 9,213 + ABID97_RS25450 0.82 -1.0 9,214 - ABID97_RS25450 0.82 +0.3 9,402 - +0.3 9,597 + -0.9 9,598 - -0.6 9,621 + -0.7 9,622 - -0.7 9,711 + +0.2 9,712 - -0.1 9,712 - +0.0 9,864 + ABID97_RS25455 0.23 -0.8 10,039 - ABID97_RS25455 0.38 -0.4 10,191 + ABID97_RS25455 0.51 +0.2 10,192 - ABID97_RS25455 0.51 +0.7 10,218 + ABID97_RS25455 0.53 -0.9 10,218 + ABID97_RS25455 0.53 -0.1 10,219 - ABID97_RS25455 0.53 -1.4 10,219 - ABID97_RS25455 0.53 +1.2 10,308 + ABID97_RS25455 0.61 -0.8 11,146 - ABID97_RS25460 0.84 +3.0 11,390 + ABID97_RS25465 0.20 +0.0 11,391 - ABID97_RS25465 0.20 -0.5 11,631 - ABID97_RS25465 0.46 -0.3
Or see this region's nucleotide sequence