Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24575 and ABID97_RS24580 are separated by 46 nucleotides ABID97_RS24580 and ABID97_RS24585 are separated by 7 nucleotides
ABID97_RS24575: ABID97_RS24575 - alpha-hydroxy acid oxidase, at 5,085,939 to 5,087,069
_RS24575
ABID97_RS24580: ABID97_RS24580 - 2-dehydropantoate 2-reductase, at 5,087,116 to 5,088,039
_RS24580
ABID97_RS24585: ABID97_RS24585 - MFS transporter, at 5,088,047 to 5,089,441
_RS24585
Position (kb) 5087
5088
5089 Strain fitness (log2 ratio) -2
-1
0
1 at 5086.627 kb on + strand, within ABID97_RS24575 at 5086.627 kb on + strand, within ABID97_RS24575 at 5086.627 kb on + strand, within ABID97_RS24575 at 5086.684 kb on + strand, within ABID97_RS24575 at 5086.684 kb on + strand, within ABID97_RS24575 at 5086.684 kb on + strand, within ABID97_RS24575 at 5086.685 kb on - strand, within ABID97_RS24575 at 5086.725 kb on + strand, within ABID97_RS24575 at 5087.008 kb on + strand at 5087.076 kb on + strand at 5087.077 kb on - strand at 5087.100 kb on + strand at 5087.341 kb on + strand, within ABID97_RS24580 at 5087.342 kb on - strand, within ABID97_RS24580 at 5087.411 kb on - strand, within ABID97_RS24580 at 5087.954 kb on - strand at 5088.026 kb on - strand at 5088.181 kb on - strand at 5088.297 kb on + strand, within ABID97_RS24585 at 5088.297 kb on + strand, within ABID97_RS24585 at 5088.318 kb on + strand, within ABID97_RS24585 at 5088.385 kb on + strand, within ABID97_RS24585 at 5088.525 kb on + strand, within ABID97_RS24585 at 5088.525 kb on + strand, within ABID97_RS24585 at 5088.525 kb on + strand, within ABID97_RS24585 at 5088.525 kb on + strand, within ABID97_RS24585 at 5088.526 kb on - strand, within ABID97_RS24585 at 5088.526 kb on - strand, within ABID97_RS24585 at 5088.526 kb on - strand, within ABID97_RS24585 at 5088.526 kb on - strand, within ABID97_RS24585 at 5088.606 kb on + strand, within ABID97_RS24585 at 5088.606 kb on + strand, within ABID97_RS24585 at 5088.729 kb on + strand, within ABID97_RS24585 at 5088.730 kb on - strand, within ABID97_RS24585 at 5088.734 kb on - strand, within ABID97_RS24585 at 5088.734 kb on - strand, within ABID97_RS24585 at 5088.956 kb on + strand, within ABID97_RS24585
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 5,086,627 + ABID97_RS24575 0.61 -0.6 5,086,627 + ABID97_RS24575 0.61 +0.4 5,086,627 + ABID97_RS24575 0.61 +1.3 5,086,684 + ABID97_RS24575 0.66 +0.4 5,086,684 + ABID97_RS24575 0.66 +0.6 5,086,684 + ABID97_RS24575 0.66 +0.0 5,086,685 - ABID97_RS24575 0.66 -0.2 5,086,725 + ABID97_RS24575 0.69 +0.4 5,087,008 + +0.3 5,087,076 + -0.0 5,087,077 - -2.4 5,087,100 + +0.7 5,087,341 + ABID97_RS24580 0.24 -0.2 5,087,342 - ABID97_RS24580 0.24 -1.3 5,087,411 - ABID97_RS24580 0.32 +0.1 5,087,954 - -1.0 5,088,026 - +1.2 5,088,181 - +1.5 5,088,297 + ABID97_RS24585 0.18 -0.3 5,088,297 + ABID97_RS24585 0.18 -0.1 5,088,318 + ABID97_RS24585 0.19 +0.2 5,088,385 + ABID97_RS24585 0.24 -0.3 5,088,525 + ABID97_RS24585 0.34 +0.4 5,088,525 + ABID97_RS24585 0.34 -0.1 5,088,525 + ABID97_RS24585 0.34 -2.4 5,088,525 + ABID97_RS24585 0.34 -0.4 5,088,526 - ABID97_RS24585 0.34 +0.4 5,088,526 - ABID97_RS24585 0.34 +0.0 5,088,526 - ABID97_RS24585 0.34 -1.2 5,088,526 - ABID97_RS24585 0.34 +0.2 5,088,606 + ABID97_RS24585 0.40 -0.6 5,088,606 + ABID97_RS24585 0.40 +1.7 5,088,729 + ABID97_RS24585 0.49 +0.1 5,088,730 - ABID97_RS24585 0.49 +0.1 5,088,734 - ABID97_RS24585 0.49 -0.5 5,088,734 - ABID97_RS24585 0.49 +1.2 5,088,956 + ABID97_RS24585 0.65 -0.2
Or see this region's nucleotide sequence