Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24465

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24460 and ABID97_RS24465 are separated by 41 nucleotidesABID97_RS24465 and ABID97_RS24470 are separated by 40 nucleotides ABID97_RS24460: ABID97_RS24460 - 2-dehydropantoate 2-reductase, at 5,063,632 to 5,064,645 _RS24460 ABID97_RS24465: ABID97_RS24465 - fumarylacetoacetate hydrolase family protein, at 5,064,687 to 5,065,463 _RS24465 ABID97_RS24470: ABID97_RS24470 - succinate--CoA ligase subunit alpha, at 5,065,504 to 5,066,403 _RS24470 Position (kb) 5064 5065 5066Strain fitness (log2 ratio) -1 0 1at 5063.708 kb on + strandat 5064.206 kb on + strand, within ABID97_RS24460at 5064.206 kb on + strand, within ABID97_RS24460at 5064.317 kb on + strand, within ABID97_RS24460at 5064.637 kb on + strandat 5064.637 kb on + strandat 5064.637 kb on + strandat 5064.637 kb on + strandat 5064.637 kb on + strandat 5064.638 kb on - strandat 5064.638 kb on - strandat 5064.871 kb on + strand, within ABID97_RS24465at 5065.052 kb on - strand, within ABID97_RS24465at 5065.187 kb on - strand, within ABID97_RS24465at 5065.210 kb on + strand, within ABID97_RS24465at 5065.211 kb on - strand, within ABID97_RS24465at 5065.211 kb on - strand, within ABID97_RS24465at 5065.521 kb on - strandat 5065.920 kb on - strand, within ABID97_RS24470at 5066.180 kb on + strand, within ABID97_RS24470at 5066.180 kb on + strand, within ABID97_RS24470at 5066.180 kb on + strand, within ABID97_RS24470at 5066.180 kb on + strand, within ABID97_RS24470at 5066.181 kb on - strand, within ABID97_RS24470

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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5,063,708 + +0.9
5,064,206 + ABID97_RS24460 0.57 -0.4
5,064,206 + ABID97_RS24460 0.57 +0.0
5,064,317 + ABID97_RS24460 0.68 +0.2
5,064,637 + -0.2
5,064,637 + +0.7
5,064,637 + +0.3
5,064,637 + +0.0
5,064,637 + +0.7
5,064,638 - -0.3
5,064,638 - +0.6
5,064,871 + ABID97_RS24465 0.24 +0.1
5,065,052 - ABID97_RS24465 0.47 +0.3
5,065,187 - ABID97_RS24465 0.64 +0.3
5,065,210 + ABID97_RS24465 0.67 -0.8
5,065,211 - ABID97_RS24465 0.67 +0.4
5,065,211 - ABID97_RS24465 0.67 +0.3
5,065,521 - +0.8
5,065,920 - ABID97_RS24470 0.46 -1.1
5,066,180 + ABID97_RS24470 0.75 -0.9
5,066,180 + ABID97_RS24470 0.75 -0.3
5,066,180 + ABID97_RS24470 0.75 +0.6
5,066,180 + ABID97_RS24470 0.75 -1.0
5,066,181 - ABID97_RS24470 0.75 +0.1

Or see this region's nucleotide sequence