Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24385 and ABID97_RS24390 are separated by 78 nucleotides ABID97_RS24390 and ABID97_RS24395 are separated by 161 nucleotides ABID97_RS24395 and ABID97_RS24400 are separated by 61 nucleotides ABID97_RS24400 and ABID97_RS24405 are separated by 25 nucleotides ABID97_RS24405 and ABID97_RS24410 are separated by 25 nucleotides
ABID97_RS24385: ABID97_RS24385 - protocatechuate 3,4-dioxygenase subunit alpha, at 5,047,039 to 5,047,650
_RS24385
ABID97_RS24390: ABID97_RS24390 - c-type cytochrome, at 5,047,729 to 5,048,421
_RS24390
ABID97_RS24395: ABID97_RS24395 - AAA family ATPase, at 5,048,583 to 5,049,437
_RS24395
ABID97_RS24400: ABID97_RS24400 - hypothetical protein, at 5,049,499 to 5,049,750
_RS24400
ABID97_RS24405: ABID97_RS24405 - GNAT family N-acetyltransferase, at 5,049,776 to 5,050,372
_RS24405
ABID97_RS24410: ABID97_RS24410 - VWA domain-containing protein, at 5,050,398 to 5,051,585
_RS24410
Position (kb) 5048
5049
5050 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5047.594 kb on + strand at 5047.595 kb on - strand at 5047.595 kb on - strand at 5047.595 kb on - strand at 5047.796 kb on + strand at 5047.796 kb on + strand at 5047.926 kb on - strand, within ABID97_RS24390 at 5048.108 kb on + strand, within ABID97_RS24390 at 5048.108 kb on + strand, within ABID97_RS24390 at 5048.108 kb on + strand, within ABID97_RS24390 at 5048.109 kb on - strand, within ABID97_RS24390 at 5048.109 kb on - strand, within ABID97_RS24390 at 5048.111 kb on + strand, within ABID97_RS24390 at 5048.112 kb on - strand, within ABID97_RS24390 at 5048.112 kb on - strand, within ABID97_RS24390 at 5048.195 kb on + strand, within ABID97_RS24390 at 5048.195 kb on + strand, within ABID97_RS24390 at 5048.219 kb on + strand, within ABID97_RS24390 at 5048.219 kb on + strand, within ABID97_RS24390 at 5048.219 kb on + strand, within ABID97_RS24390 at 5048.446 kb on + strand at 5048.472 kb on + strand at 5048.472 kb on + strand at 5048.473 kb on - strand at 5048.474 kb on + strand at 5048.475 kb on - strand at 5048.475 kb on - strand at 5048.475 kb on - strand at 5048.607 kb on + strand at 5048.607 kb on + strand at 5048.607 kb on + strand at 5048.608 kb on - strand at 5048.608 kb on - strand at 5048.608 kb on - strand at 5048.608 kb on - strand at 5048.608 kb on - strand at 5048.791 kb on - strand, within ABID97_RS24395 at 5048.791 kb on - strand, within ABID97_RS24395 at 5048.796 kb on + strand, within ABID97_RS24395 at 5048.796 kb on + strand, within ABID97_RS24395 at 5048.796 kb on + strand, within ABID97_RS24395 at 5048.796 kb on + strand, within ABID97_RS24395 at 5048.797 kb on - strand, within ABID97_RS24395 at 5048.874 kb on + strand, within ABID97_RS24395 at 5048.874 kb on + strand, within ABID97_RS24395 at 5048.875 kb on - strand, within ABID97_RS24395 at 5048.875 kb on - strand, within ABID97_RS24395 at 5048.875 kb on - strand, within ABID97_RS24395 at 5049.007 kb on - strand, within ABID97_RS24395 at 5049.007 kb on - strand, within ABID97_RS24395 at 5049.012 kb on + strand, within ABID97_RS24395 at 5049.012 kb on + strand, within ABID97_RS24395 at 5049.013 kb on - strand, within ABID97_RS24395 at 5049.120 kb on + strand, within ABID97_RS24395 at 5049.120 kb on + strand, within ABID97_RS24395 at 5049.121 kb on - strand, within ABID97_RS24395 at 5049.219 kb on + strand, within ABID97_RS24395 at 5049.220 kb on - strand, within ABID97_RS24395 at 5049.220 kb on - strand, within ABID97_RS24395 at 5049.220 kb on - strand, within ABID97_RS24395 at 5049.220 kb on - strand, within ABID97_RS24395 at 5049.414 kb on + strand at 5049.730 kb on + strand at 5049.731 kb on - strand at 5049.758 kb on + strand at 5049.758 kb on + strand at 5049.933 kb on - strand, within ABID97_RS24405 at 5049.933 kb on - strand, within ABID97_RS24405 at 5049.933 kb on - strand, within ABID97_RS24405 at 5050.079 kb on + strand, within ABID97_RS24405 at 5050.079 kb on + strand, within ABID97_RS24405 at 5050.079 kb on + strand, within ABID97_RS24405 at 5050.298 kb on + strand, within ABID97_RS24405 at 5050.298 kb on + strand, within ABID97_RS24405 at 5050.298 kb on + strand, within ABID97_RS24405 at 5050.298 kb on + strand, within ABID97_RS24405 at 5050.298 kb on + strand, within ABID97_RS24405 at 5050.298 kb on + strand, within ABID97_RS24405 at 5050.299 kb on - strand, within ABID97_RS24405 at 5050.299 kb on - strand, within ABID97_RS24405 at 5050.346 kb on + strand at 5050.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 5,047,594 + -3.6 5,047,595 - -5.2 5,047,595 - -1.3 5,047,595 - -2.7 5,047,796 + -1.3 5,047,796 + -1.4 5,047,926 - ABID97_RS24390 0.28 -0.8 5,048,108 + ABID97_RS24390 0.55 -1.2 5,048,108 + ABID97_RS24390 0.55 -1.0 5,048,108 + ABID97_RS24390 0.55 -1.5 5,048,109 - ABID97_RS24390 0.55 -1.5 5,048,109 - ABID97_RS24390 0.55 -0.9 5,048,111 + ABID97_RS24390 0.55 +0.6 5,048,112 - ABID97_RS24390 0.55 -0.6 5,048,112 - ABID97_RS24390 0.55 +0.2 5,048,195 + ABID97_RS24390 0.67 -2.1 5,048,195 + ABID97_RS24390 0.67 -2.7 5,048,219 + ABID97_RS24390 0.71 -2.4 5,048,219 + ABID97_RS24390 0.71 -0.6 5,048,219 + ABID97_RS24390 0.71 -1.2 5,048,446 + -1.6 5,048,472 + -1.3 5,048,472 + -1.7 5,048,473 - +1.6 5,048,474 + -0.2 5,048,475 - -0.1 5,048,475 - +0.2 5,048,475 - +0.1 5,048,607 + +0.8 5,048,607 + -0.6 5,048,607 + -0.0 5,048,608 - +1.0 5,048,608 - -0.2 5,048,608 - +0.9 5,048,608 - -0.4 5,048,608 - -0.8 5,048,791 - ABID97_RS24395 0.24 +0.3 5,048,791 - ABID97_RS24395 0.24 +0.2 5,048,796 + ABID97_RS24395 0.25 +0.5 5,048,796 + ABID97_RS24395 0.25 -2.3 5,048,796 + ABID97_RS24395 0.25 -0.3 5,048,796 + ABID97_RS24395 0.25 +1.1 5,048,797 - ABID97_RS24395 0.25 +0.6 5,048,874 + ABID97_RS24395 0.34 +0.9 5,048,874 + ABID97_RS24395 0.34 -0.6 5,048,875 - ABID97_RS24395 0.34 -0.2 5,048,875 - ABID97_RS24395 0.34 +0.6 5,048,875 - ABID97_RS24395 0.34 +0.4 5,049,007 - ABID97_RS24395 0.50 +0.5 5,049,007 - ABID97_RS24395 0.50 +0.3 5,049,012 + ABID97_RS24395 0.50 -0.9 5,049,012 + ABID97_RS24395 0.50 -0.6 5,049,013 - ABID97_RS24395 0.50 +0.3 5,049,120 + ABID97_RS24395 0.63 +0.5 5,049,120 + ABID97_RS24395 0.63 +0.0 5,049,121 - ABID97_RS24395 0.63 -0.3 5,049,219 + ABID97_RS24395 0.74 -0.1 5,049,220 - ABID97_RS24395 0.75 +2.0 5,049,220 - ABID97_RS24395 0.75 +0.2 5,049,220 - ABID97_RS24395 0.75 -0.7 5,049,220 - ABID97_RS24395 0.75 +0.4 5,049,414 + +0.0 5,049,730 + -0.4 5,049,731 - +0.5 5,049,758 + -0.6 5,049,758 + +0.6 5,049,933 - ABID97_RS24405 0.26 -0.8 5,049,933 - ABID97_RS24405 0.26 +0.2 5,049,933 - ABID97_RS24405 0.26 +0.3 5,050,079 + ABID97_RS24405 0.51 +0.9 5,050,079 + ABID97_RS24405 0.51 +0.2 5,050,079 + ABID97_RS24405 0.51 -0.3 5,050,298 + ABID97_RS24405 0.87 +0.2 5,050,298 + ABID97_RS24405 0.87 -0.3 5,050,298 + ABID97_RS24405 0.87 -0.2 5,050,298 + ABID97_RS24405 0.87 +0.8 5,050,298 + ABID97_RS24405 0.87 +0.5 5,050,298 + ABID97_RS24405 0.87 +0.1 5,050,299 - ABID97_RS24405 0.88 +0.5 5,050,299 - ABID97_RS24405 0.88 -0.1 5,050,346 + -0.2 5,050,417 - -0.1
Or see this region's nucleotide sequence