Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24365 and ABID97_RS24370 are separated by 275 nucleotides ABID97_RS24370 and ABID97_RS24375 are separated by 19 nucleotides ABID97_RS24375 and ABID97_RS24380 are separated by 107 nucleotides ABID97_RS24380 and ABID97_RS24385 are separated by 11 nucleotides
ABID97_RS24365: ABID97_RS24365 - hypothetical protein, at 5,040,954 to 5,044,469
_RS24365
ABID97_RS24370: ABID97_RS24370 - DUF1841 family protein, at 5,044,745 to 5,045,179
_RS24370
ABID97_RS24375: ABID97_RS24375 - LysR substrate-binding domain-containing protein, at 5,045,199 to 5,046,194
_RS24375
ABID97_RS24380: ABID97_RS24380 - protocatechuate 3,4-dioxygenase subunit beta, at 5,046,302 to 5,047,027
_RS24380
ABID97_RS24385: ABID97_RS24385 - protocatechuate 3,4-dioxygenase subunit alpha, at 5,047,039 to 5,047,650
_RS24385
Position (kb) 5045
5046
5047 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5044.295 kb on + strand at 5044.296 kb on - strand at 5044.497 kb on + strand at 5044.497 kb on + strand at 5044.654 kb on - strand at 5044.661 kb on + strand at 5044.661 kb on + strand at 5044.738 kb on + strand at 5044.738 kb on + strand at 5044.738 kb on + strand at 5044.738 kb on + strand at 5044.739 kb on - strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.740 kb on + strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.741 kb on - strand at 5044.744 kb on + strand at 5044.744 kb on + strand at 5044.744 kb on + strand at 5044.745 kb on - strand at 5044.745 kb on - strand at 5044.745 kb on - strand at 5044.793 kb on + strand, within ABID97_RS24370 at 5044.793 kb on + strand, within ABID97_RS24370 at 5044.794 kb on - strand, within ABID97_RS24370 at 5044.794 kb on - strand, within ABID97_RS24370 at 5044.916 kb on + strand, within ABID97_RS24370 at 5044.916 kb on + strand, within ABID97_RS24370 at 5044.917 kb on - strand, within ABID97_RS24370 at 5045.142 kb on - strand at 5045.177 kb on + strand at 5045.177 kb on + strand at 5045.177 kb on + strand at 5045.177 kb on + strand at 5045.178 kb on - strand at 5045.548 kb on + strand, within ABID97_RS24375 at 5045.548 kb on + strand, within ABID97_RS24375 at 5045.549 kb on - strand, within ABID97_RS24375 at 5045.549 kb on - strand, within ABID97_RS24375 at 5045.549 kb on - strand, within ABID97_RS24375 at 5045.651 kb on + strand, within ABID97_RS24375 at 5045.652 kb on - strand, within ABID97_RS24375 at 5045.652 kb on - strand, within ABID97_RS24375 at 5045.653 kb on + strand, within ABID97_RS24375 at 5045.653 kb on + strand, within ABID97_RS24375 at 5045.654 kb on - strand, within ABID97_RS24375 at 5046.253 kb on + strand at 5046.254 kb on - strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.368 kb on + strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.369 kb on - strand at 5046.465 kb on - strand, within ABID97_RS24380 at 5046.635 kb on + strand, within ABID97_RS24380 at 5046.636 kb on - strand, within ABID97_RS24380 at 5046.636 kb on - strand, within ABID97_RS24380 at 5046.752 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.848 kb on + strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.849 kb on - strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.875 kb on + strand, within ABID97_RS24380 at 5046.959 kb on + strand at 5046.960 kb on - strand at 5047.102 kb on + strand, within ABID97_RS24385 at 5047.103 kb on - strand, within ABID97_RS24385 at 5047.132 kb on + strand, within ABID97_RS24385 at 5047.133 kb on - strand, within ABID97_RS24385
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 5,044,295 + -1.5 5,044,296 - -1.4 5,044,497 + +0.3 5,044,497 + -1.1 5,044,654 - -0.6 5,044,661 + +0.0 5,044,661 + +1.8 5,044,738 + +0.3 5,044,738 + -0.3 5,044,738 + -0.3 5,044,738 + -0.4 5,044,739 - -0.6 5,044,740 + +0.1 5,044,740 + -0.7 5,044,740 + +1.6 5,044,740 + -1.2 5,044,740 + +0.0 5,044,740 + -0.4 5,044,740 + -1.0 5,044,740 + -0.1 5,044,740 + -2.8 5,044,741 - -0.4 5,044,741 - -0.9 5,044,741 - -0.4 5,044,741 - +0.9 5,044,741 - +0.4 5,044,741 - +0.2 5,044,741 - +0.2 5,044,741 - +0.4 5,044,741 - +0.2 5,044,741 - -0.9 5,044,744 + -0.0 5,044,744 + -0.5 5,044,744 + -1.2 5,044,745 - -1.3 5,044,745 - +2.2 5,044,745 - -2.1 5,044,793 + ABID97_RS24370 0.11 -1.0 5,044,793 + ABID97_RS24370 0.11 -2.1 5,044,794 - ABID97_RS24370 0.11 -2.4 5,044,794 - ABID97_RS24370 0.11 -0.6 5,044,916 + ABID97_RS24370 0.39 -0.8 5,044,916 + ABID97_RS24370 0.39 -2.0 5,044,917 - ABID97_RS24370 0.40 -1.4 5,045,142 - -1.3 5,045,177 + -0.4 5,045,177 + +0.1 5,045,177 + -0.9 5,045,177 + +0.2 5,045,178 - +0.6 5,045,548 + ABID97_RS24375 0.35 -1.7 5,045,548 + ABID97_RS24375 0.35 -3.6 5,045,549 - ABID97_RS24375 0.35 -3.9 5,045,549 - ABID97_RS24375 0.35 -4.0 5,045,549 - ABID97_RS24375 0.35 -2.7 5,045,651 + ABID97_RS24375 0.45 -0.4 5,045,652 - ABID97_RS24375 0.45 -2.3 5,045,652 - ABID97_RS24375 0.45 -2.3 5,045,653 + ABID97_RS24375 0.46 -3.6 5,045,653 + ABID97_RS24375 0.46 -3.3 5,045,654 - ABID97_RS24375 0.46 -3.3 5,046,253 + +0.2 5,046,254 - -1.3 5,046,368 + -1.0 5,046,368 + -4.7 5,046,368 + -3.4 5,046,368 + -1.7 5,046,368 + -0.6 5,046,369 - -1.0 5,046,369 - -3.1 5,046,369 - -0.4 5,046,369 - -3.8 5,046,369 - -3.9 5,046,465 - ABID97_RS24380 0.22 -3.7 5,046,635 + ABID97_RS24380 0.46 -2.6 5,046,636 - ABID97_RS24380 0.46 -1.4 5,046,636 - ABID97_RS24380 0.46 -3.2 5,046,752 + ABID97_RS24380 0.62 -1.8 5,046,848 + ABID97_RS24380 0.75 -3.4 5,046,848 + ABID97_RS24380 0.75 -2.1 5,046,848 + ABID97_RS24380 0.75 -1.8 5,046,848 + ABID97_RS24380 0.75 -2.2 5,046,849 - ABID97_RS24380 0.75 -3.7 5,046,849 - ABID97_RS24380 0.75 -3.7 5,046,849 - ABID97_RS24380 0.75 -4.4 5,046,849 - ABID97_RS24380 0.75 -4.8 5,046,875 + ABID97_RS24380 0.79 -3.5 5,046,875 + ABID97_RS24380 0.79 -3.6 5,046,875 + ABID97_RS24380 0.79 -2.3 5,046,875 + ABID97_RS24380 0.79 -3.8 5,046,959 + -2.7 5,046,960 - -3.5 5,047,102 + ABID97_RS24385 0.10 -5.4 5,047,103 - ABID97_RS24385 0.10 -3.3 5,047,132 + ABID97_RS24385 0.15 -2.5 5,047,133 - ABID97_RS24385 0.15 +0.6
Or see this region's nucleotide sequence