Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23735

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23730 and ABID97_RS23735 overlap by 4 nucleotidesABID97_RS23735 and ABID97_RS23740 overlap by 4 nucleotidesABID97_RS23740 and ABID97_RS23745 are separated by 66 nucleotides ABID97_RS23730: ABID97_RS23730 - tetratricopeptide repeat protein, at 4,913,983 to 4,915,839 _RS23730 ABID97_RS23735: ABID97_RS23735 - lipoprotein insertase outer membrane protein LolB, at 4,915,836 to 4,916,360 _RS23735 ABID97_RS23740: ABID97_RS23740 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 4,916,357 to 4,917,247 _RS23740 ABID97_RS23745: ABID97_RS23745 - tRNA-Gln, at 4,917,314 to 4,917,390 _RS23745 Position (kb) 4915 4916 4917Strain fitness (log2 ratio) -1 0 1 2 3at 4915.027 kb on + strand, within ABID97_RS23730at 4915.027 kb on + strand, within ABID97_RS23730at 4915.029 kb on + strand, within ABID97_RS23730at 4915.029 kb on + strand, within ABID97_RS23730at 4915.090 kb on + strand, within ABID97_RS23730at 4915.129 kb on + strand, within ABID97_RS23730at 4915.129 kb on + strand, within ABID97_RS23730at 4915.345 kb on + strand, within ABID97_RS23730at 4915.498 kb on + strand, within ABID97_RS23730at 4915.498 kb on + strand, within ABID97_RS23730at 4915.499 kb on - strand, within ABID97_RS23730at 4915.499 kb on - strand, within ABID97_RS23730at 4915.675 kb on + strandat 4915.676 kb on - strandat 4915.676 kb on - strandat 4917.281 kb on + strandat 4917.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,915,027 + ABID97_RS23730 0.56 +1.6
4,915,027 + ABID97_RS23730 0.56 +2.1
4,915,029 + ABID97_RS23730 0.56 +2.4
4,915,029 + ABID97_RS23730 0.56 +1.5
4,915,090 + ABID97_RS23730 0.60 +3.4
4,915,129 + ABID97_RS23730 0.62 +1.2
4,915,129 + ABID97_RS23730 0.62 -0.8
4,915,345 + ABID97_RS23730 0.73 +1.6
4,915,498 + ABID97_RS23730 0.82 +0.8
4,915,498 + ABID97_RS23730 0.82 +1.2
4,915,499 - ABID97_RS23730 0.82 +0.2
4,915,499 - ABID97_RS23730 0.82 +0.8
4,915,675 + +0.8
4,915,676 - +1.3
4,915,676 - -0.3
4,917,281 + -0.4
4,917,281 + -1.6

Or see this region's nucleotide sequence