Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22930

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22920 and ABID97_RS22925 are separated by 328 nucleotidesABID97_RS22925 and ABID97_RS22930 overlap by 8 nucleotidesABID97_RS22930 and ABID97_RS22935 are separated by 133 nucleotides ABID97_RS22920: ABID97_RS22920 - hypothetical protein, at 4,743,745 to 4,744,473 _RS22920 ABID97_RS22925: ABID97_RS22925 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 4,744,802 to 4,745,479 _RS22925 ABID97_RS22930: ABID97_RS22930 - lipoprotein-releasing ABC transporter permease subunit, at 4,745,472 to 4,746,728 _RS22930 ABID97_RS22935: ABID97_RS22935 - hypothetical protein, at 4,746,862 to 4,747,830 _RS22935 Position (kb) 4745 4746 4747Strain fitness (log2 ratio) -2 -1 0 1at 4744.564 kb on - strandat 4744.564 kb on - strandat 4744.619 kb on - strandat 4745.480 kb on - strandat 4745.480 kb on - strandat 4746.729 kb on - strandat 4746.840 kb on + strandat 4746.840 kb on + strandat 4746.840 kb on + strandat 4746.841 kb on - strandat 4746.841 kb on - strandat 4746.841 kb on - strandat 4746.841 kb on - strandat 4746.841 kb on - strandat 4747.459 kb on + strand, within ABID97_RS22935at 4747.460 kb on - strand, within ABID97_RS22935at 4747.460 kb on - strand, within ABID97_RS22935at 4747.545 kb on + strand, within ABID97_RS22935at 4747.687 kb on + strand, within ABID97_RS22935at 4747.687 kb on + strand, within ABID97_RS22935at 4747.688 kb on - strand, within ABID97_RS22935at 4747.688 kb on - strand, within ABID97_RS22935at 4747.688 kb on - strand, within ABID97_RS22935

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,744,564 - -0.7
4,744,564 - -0.0
4,744,619 - +0.6
4,745,480 - -1.4
4,745,480 - +0.6
4,746,729 - +0.5
4,746,840 + -0.4
4,746,840 + -0.8
4,746,840 + -1.1
4,746,841 - +0.1
4,746,841 - +0.3
4,746,841 - -1.5
4,746,841 - -0.2
4,746,841 - +1.3
4,747,459 + ABID97_RS22935 0.62 -2.6
4,747,460 - ABID97_RS22935 0.62 -1.0
4,747,460 - ABID97_RS22935 0.62 -1.0
4,747,545 + ABID97_RS22935 0.70 -0.5
4,747,687 + ABID97_RS22935 0.85 -0.3
4,747,687 + ABID97_RS22935 0.85 +1.1
4,747,688 - ABID97_RS22935 0.85 +0.1
4,747,688 - ABID97_RS22935 0.85 -0.3
4,747,688 - ABID97_RS22935 0.85 -0.2

Or see this region's nucleotide sequence