Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22920 and ABID97_RS22925 are separated by 328 nucleotides ABID97_RS22925 and ABID97_RS22930 overlap by 8 nucleotides ABID97_RS22930 and ABID97_RS22935 are separated by 133 nucleotides
ABID97_RS22920: ABID97_RS22920 - hypothetical protein, at 4,743,745 to 4,744,473
_RS22920
ABID97_RS22925: ABID97_RS22925 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 4,744,802 to 4,745,479
_RS22925
ABID97_RS22930: ABID97_RS22930 - lipoprotein-releasing ABC transporter permease subunit, at 4,745,472 to 4,746,728
_RS22930
ABID97_RS22935: ABID97_RS22935 - hypothetical protein, at 4,746,862 to 4,747,830
_RS22935
Position (kb)
4745
4746
4747 Strain fitness (log2 ratio)
-2
-1
0
1 at 4744.564 kb on - strand at 4744.564 kb on - strand at 4744.619 kb on - strand at 4745.480 kb on - strand at 4745.480 kb on - strand at 4746.729 kb on - strand at 4746.840 kb on + strand at 4746.840 kb on + strand at 4746.840 kb on + strand at 4746.841 kb on - strand at 4746.841 kb on - strand at 4746.841 kb on - strand at 4746.841 kb on - strand at 4746.841 kb on - strand at 4747.459 kb on + strand, within ABID97_RS22935 at 4747.460 kb on - strand, within ABID97_RS22935 at 4747.460 kb on - strand, within ABID97_RS22935 at 4747.545 kb on + strand, within ABID97_RS22935 at 4747.687 kb on + strand, within ABID97_RS22935 at 4747.687 kb on + strand, within ABID97_RS22935 at 4747.688 kb on - strand, within ABID97_RS22935 at 4747.688 kb on - strand, within ABID97_RS22935 at 4747.688 kb on - strand, within ABID97_RS22935
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,744,564 - -0.7 4,744,564 - -0.0 4,744,619 - +0.6 4,745,480 - -1.4 4,745,480 - +0.6 4,746,729 - +0.5 4,746,840 + -0.4 4,746,840 + -0.8 4,746,840 + -1.1 4,746,841 - +0.1 4,746,841 - +0.3 4,746,841 - -1.5 4,746,841 - -0.2 4,746,841 - +1.3 4,747,459 + ABID97_RS22935 0.62 -2.6 4,747,460 - ABID97_RS22935 0.62 -1.0 4,747,460 - ABID97_RS22935 0.62 -1.0 4,747,545 + ABID97_RS22935 0.70 -0.5 4,747,687 + ABID97_RS22935 0.85 -0.3 4,747,687 + ABID97_RS22935 0.85 +1.1 4,747,688 - ABID97_RS22935 0.85 +0.1 4,747,688 - ABID97_RS22935 0.85 -0.3 4,747,688 - ABID97_RS22935 0.85 -0.2
Or see this region's nucleotide sequence