Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22770

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22760 and ABID97_RS22765 are separated by 66 nucleotidesABID97_RS22765 and ABID97_RS22770 are separated by 150 nucleotidesABID97_RS22770 and ABID97_RS22775 overlap by 1 nucleotidesABID97_RS22775 and ABID97_RS22780 are separated by 11 nucleotides ABID97_RS22760: ABID97_RS22760 - TetR/AcrR family transcriptional regulator, at 4,714,037 to 4,714,702 _RS22760 ABID97_RS22765: ABID97_RS22765 - phenylacetic acid degradation protein PaaY, at 4,714,769 to 4,715,371 _RS22765 ABID97_RS22770: ABID97_RS22770 - enoyl-CoA hydratase-related protein, at 4,715,522 to 4,716,325 _RS22770 ABID97_RS22775: ABID97_RS22775 - hydroxyphenylacetyl-CoA thioesterase PaaI, at 4,716,325 to 4,716,768 _RS22775 ABID97_RS22780: ABID97_RS22780 - phenylacetate--CoA ligase PaaK, at 4,716,780 to 4,718,096 _RS22780 Position (kb) 4715 4716 4717Strain fitness (log2 ratio) -1 0 1at 4714.557 kb on + strand, within ABID97_RS22760at 4714.558 kb on - strand, within ABID97_RS22760at 4714.677 kb on + strandat 4714.677 kb on + strandat 4714.678 kb on - strandat 4714.897 kb on - strand, within ABID97_RS22765at 4715.265 kb on + strand, within ABID97_RS22765at 4715.319 kb on + strandat 4715.320 kb on - strandat 4715.361 kb on + strandat 4715.361 kb on + strandat 4715.362 kb on - strandat 4715.362 kb on - strandat 4715.683 kb on + strand, within ABID97_RS22770at 4715.684 kb on - strand, within ABID97_RS22770at 4715.684 kb on - strand, within ABID97_RS22770at 4715.795 kb on + strand, within ABID97_RS22770at 4715.795 kb on + strand, within ABID97_RS22770at 4715.795 kb on + strand, within ABID97_RS22770at 4715.796 kb on - strand, within ABID97_RS22770at 4715.798 kb on + strand, within ABID97_RS22770at 4715.798 kb on + strand, within ABID97_RS22770at 4715.799 kb on - strand, within ABID97_RS22770at 4715.799 kb on - strand, within ABID97_RS22770at 4715.799 kb on - strand, within ABID97_RS22770at 4716.364 kb on + strandat 4716.365 kb on - strandat 4716.673 kb on + strand, within ABID97_RS22775at 4716.674 kb on - strand, within ABID97_RS22775at 4716.733 kb on + strandat 4716.733 kb on + strandat 4716.733 kb on + strandat 4716.892 kb on - strandat 4717.014 kb on + strand, within ABID97_RS22780

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,714,557 + ABID97_RS22760 0.78 -0.6
4,714,558 - ABID97_RS22760 0.78 +0.7
4,714,677 + +0.2
4,714,677 + -0.5
4,714,678 - +0.2
4,714,897 - ABID97_RS22765 0.21 +1.2
4,715,265 + ABID97_RS22765 0.82 +1.0
4,715,319 + +0.2
4,715,320 - +0.7
4,715,361 + +1.6
4,715,361 + -0.9
4,715,362 - +1.1
4,715,362 - +0.2
4,715,683 + ABID97_RS22770 0.20 -0.6
4,715,684 - ABID97_RS22770 0.20 +0.5
4,715,684 - ABID97_RS22770 0.20 -1.1
4,715,795 + ABID97_RS22770 0.34 -0.7
4,715,795 + ABID97_RS22770 0.34 -0.1
4,715,795 + ABID97_RS22770 0.34 -0.5
4,715,796 - ABID97_RS22770 0.34 +0.7
4,715,798 + ABID97_RS22770 0.34 +0.2
4,715,798 + ABID97_RS22770 0.34 +0.2
4,715,799 - ABID97_RS22770 0.34 -0.4
4,715,799 - ABID97_RS22770 0.34 -0.4
4,715,799 - ABID97_RS22770 0.34 +0.1
4,716,364 + -1.4
4,716,365 - -0.8
4,716,673 + ABID97_RS22775 0.78 +0.8
4,716,674 - ABID97_RS22775 0.79 +0.2
4,716,733 + +0.0
4,716,733 + +0.3
4,716,733 + +0.5
4,716,892 - +0.3
4,717,014 + ABID97_RS22780 0.18 +0.1

Or see this region's nucleotide sequence