Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22745 and ABID97_RS22750 overlap by 17 nucleotides ABID97_RS22750 and ABID97_RS22755 are separated by 143 nucleotides ABID97_RS22755 and ABID97_RS22760 overlap by 19 nucleotides ABID97_RS22760 and ABID97_RS22765 are separated by 66 nucleotides
ABID97_RS22745: ABID97_RS22745 - VWA domain-containing protein, at 4,711,491 to 4,712,528
_RS22745
ABID97_RS22750: ABID97_RS22750 - TetR/AcrR family transcriptional regulator, at 4,712,512 to 4,713,108
_RS22750
ABID97_RS22755: ABID97_RS22755 - SDR family NAD(P)-dependent oxidoreductase, at 4,713,252 to 4,714,055
_RS22755
ABID97_RS22760: ABID97_RS22760 - TetR/AcrR family transcriptional regulator, at 4,714,037 to 4,714,702
_RS22760
ABID97_RS22765: ABID97_RS22765 - phenylacetic acid degradation protein PaaY, at 4,714,769 to 4,715,371
_RS22765
Position (kb) 4713
4714
4715 Strain fitness (log2 ratio) -2
-1
0
1 at 4712.252 kb on - strand, within ABID97_RS22745 at 4712.361 kb on + strand, within ABID97_RS22745 at 4712.361 kb on + strand, within ABID97_RS22745 at 4712.630 kb on + strand, within ABID97_RS22750 at 4712.630 kb on + strand, within ABID97_RS22750 at 4712.630 kb on + strand, within ABID97_RS22750 at 4712.631 kb on - strand, within ABID97_RS22750 at 4712.631 kb on - strand, within ABID97_RS22750 at 4712.631 kb on - strand, within ABID97_RS22750 at 4712.631 kb on - strand, within ABID97_RS22750 at 4712.726 kb on + strand, within ABID97_RS22750 at 4712.840 kb on + strand, within ABID97_RS22750 at 4712.841 kb on - strand, within ABID97_RS22750 at 4712.852 kb on + strand, within ABID97_RS22750 at 4712.966 kb on + strand, within ABID97_RS22750 at 4712.967 kb on - strand, within ABID97_RS22750 at 4712.967 kb on - strand, within ABID97_RS22750 at 4713.118 kb on + strand at 4713.717 kb on + strand, within ABID97_RS22755 at 4713.717 kb on + strand, within ABID97_RS22755 at 4714.038 kb on + strand at 4714.425 kb on + strand, within ABID97_RS22760 at 4714.557 kb on + strand, within ABID97_RS22760 at 4714.558 kb on - strand, within ABID97_RS22760 at 4714.677 kb on + strand at 4714.677 kb on + strand at 4714.678 kb on - strand at 4714.897 kb on - strand, within ABID97_RS22765
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,712,252 - ABID97_RS22745 0.73 +0.1 4,712,361 + ABID97_RS22745 0.84 -0.0 4,712,361 + ABID97_RS22745 0.84 -2.1 4,712,630 + ABID97_RS22750 0.20 -0.3 4,712,630 + ABID97_RS22750 0.20 -2.4 4,712,630 + ABID97_RS22750 0.20 +1.1 4,712,631 - ABID97_RS22750 0.20 +0.1 4,712,631 - ABID97_RS22750 0.20 +0.1 4,712,631 - ABID97_RS22750 0.20 +0.4 4,712,631 - ABID97_RS22750 0.20 -0.0 4,712,726 + ABID97_RS22750 0.36 +0.4 4,712,840 + ABID97_RS22750 0.55 +0.7 4,712,841 - ABID97_RS22750 0.55 +1.1 4,712,852 + ABID97_RS22750 0.57 -0.9 4,712,966 + ABID97_RS22750 0.76 -0.0 4,712,967 - ABID97_RS22750 0.76 +0.7 4,712,967 - ABID97_RS22750 0.76 -0.9 4,713,118 + +0.9 4,713,717 + ABID97_RS22755 0.58 +0.0 4,713,717 + ABID97_RS22755 0.58 -0.7 4,714,038 + +0.0 4,714,425 + ABID97_RS22760 0.58 -0.4 4,714,557 + ABID97_RS22760 0.78 -0.6 4,714,558 - ABID97_RS22760 0.78 +0.7 4,714,677 + +0.2 4,714,677 + -0.5 4,714,678 - +0.2 4,714,897 - ABID97_RS22765 0.21 +1.2
Or see this region's nucleotide sequence