Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21310

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21300 and ABID97_RS21305 are separated by 169 nucleotidesABID97_RS21305 and ABID97_RS21310 are separated by 123 nucleotidesABID97_RS21310 and ABID97_RS21315 overlap by 4 nucleotidesABID97_RS21315 and ABID97_RS21320 are separated by 4 nucleotides ABID97_RS21300: ABID97_RS21300 - phosphogluconate dehydratase, at 4,395,615 to 4,397,441 _RS21300 ABID97_RS21305: ABID97_RS21305 - OmpA family protein, at 4,397,611 to 4,398,162 _RS21305 ABID97_RS21310: ABID97_RS21310 - gamma-glutamylcyclotransferase, at 4,398,286 to 4,398,990 _RS21310 ABID97_RS21315: ABID97_RS21315 - superoxide dismutase family protein, at 4,398,987 to 4,399,529 _RS21315 ABID97_RS21320: ABID97_RS21320 - nucleotidyltransferase family protein, at 4,399,534 to 4,400,109 _RS21320 Position (kb) 4398 4399Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4397.368 kb on + strandat 4397.369 kb on - strandat 4397.517 kb on - strandat 4397.517 kb on - strandat 4397.572 kb on + strandat 4397.572 kb on + strandat 4397.572 kb on + strandat 4397.572 kb on + strandat 4397.573 kb on - strandat 4397.573 kb on - strandat 4397.592 kb on + strandat 4397.593 kb on - strandat 4397.900 kb on + strand, within ABID97_RS21305at 4397.901 kb on - strand, within ABID97_RS21305at 4397.901 kb on - strand, within ABID97_RS21305at 4398.198 kb on + strandat 4398.198 kb on + strandat 4398.199 kb on - strandat 4398.199 kb on - strandat 4398.199 kb on - strandat 4398.199 kb on - strandat 4398.761 kb on - strand, within ABID97_RS21310at 4398.941 kb on + strandat 4398.941 kb on + strandat 4398.942 kb on - strandat 4398.942 kb on - strandat 4398.943 kb on + strandat 4398.944 kb on - strandat 4398.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,397,368 + +2.4
4,397,369 - +3.5
4,397,517 - -1.6
4,397,517 - -0.5
4,397,572 + -0.9
4,397,572 + +1.4
4,397,572 + +0.1
4,397,572 + -0.0
4,397,573 - +0.4
4,397,573 - -0.9
4,397,592 + -0.1
4,397,593 - +0.4
4,397,900 + ABID97_RS21305 0.52 -0.3
4,397,901 - ABID97_RS21305 0.53 +1.3
4,397,901 - ABID97_RS21305 0.53 +0.9
4,398,198 + +1.1
4,398,198 + -0.8
4,398,199 - +0.4
4,398,199 - +0.1
4,398,199 - -1.8
4,398,199 - +0.2
4,398,761 - ABID97_RS21310 0.67 -1.1
4,398,941 + -1.1
4,398,941 + -1.7
4,398,942 - -0.1
4,398,942 - -1.5
4,398,943 + +0.7
4,398,944 - +0.1
4,398,944 - -0.6

Or see this region's nucleotide sequence