Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21245

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21235 and ABID97_RS21240 overlap by 8 nucleotidesABID97_RS21240 and ABID97_RS21245 are separated by 51 nucleotidesABID97_RS21245 and ABID97_RS21250 are separated by 17 nucleotidesABID97_RS21250 and ABID97_RS21255 are separated by 140 nucleotides ABID97_RS21235: ABID97_RS21235 - MFS transporter, at 4,383,861 to 4,385,096 _RS21235 ABID97_RS21240: ABID97_RS21240 - MarR family winged helix-turn-helix transcriptional regulator, at 4,385,089 to 4,385,583 _RS21240 ABID97_RS21245: ABID97_RS21245 - PaaI family thioesterase, at 4,385,635 to 4,386,180 _RS21245 ABID97_RS21250: ABID97_RS21250 - nitroreductase, at 4,386,198 to 4,386,890 _RS21250 ABID97_RS21255: ABID97_RS21255 - Fe(3+) ABC transporter substrate-binding protein, at 4,387,031 to 4,388,092 _RS21255 Position (kb) 4385 4386 4387Strain fitness (log2 ratio) -2 -1 0 1at 4385.454 kb on - strand, within ABID97_RS21240at 4385.496 kb on - strand, within ABID97_RS21240at 4385.496 kb on - strand, within ABID97_RS21240at 4385.496 kb on - strand, within ABID97_RS21240at 4385.541 kb on + strandat 4385.983 kb on + strand, within ABID97_RS21245at 4385.983 kb on + strand, within ABID97_RS21245at 4385.983 kb on + strand, within ABID97_RS21245at 4385.984 kb on - strand, within ABID97_RS21245at 4385.984 kb on - strand, within ABID97_RS21245at 4385.984 kb on - strand, within ABID97_RS21245at 4386.010 kb on + strand, within ABID97_RS21245at 4386.011 kb on - strand, within ABID97_RS21245at 4386.261 kb on + strandat 4386.262 kb on - strandat 4386.483 kb on + strand, within ABID97_RS21250at 4386.484 kb on - strand, within ABID97_RS21250at 4386.484 kb on - strand, within ABID97_RS21250at 4386.520 kb on - strand, within ABID97_RS21250at 4386.666 kb on + strand, within ABID97_RS21250at 4386.924 kb on + strandat 4386.924 kb on + strandat 4386.938 kb on + strandat 4386.939 kb on - strandat 4387.149 kb on - strand, within ABID97_RS21255at 4387.151 kb on - strand, within ABID97_RS21255at 4387.151 kb on - strand, within ABID97_RS21255

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,385,454 - ABID97_RS21240 0.74 +0.5
4,385,496 - ABID97_RS21240 0.82 +1.1
4,385,496 - ABID97_RS21240 0.82 -0.5
4,385,496 - ABID97_RS21240 0.82 +0.0
4,385,541 + -0.7
4,385,983 + ABID97_RS21245 0.64 -0.4
4,385,983 + ABID97_RS21245 0.64 -0.2
4,385,983 + ABID97_RS21245 0.64 +0.6
4,385,984 - ABID97_RS21245 0.64 +0.2
4,385,984 - ABID97_RS21245 0.64 -1.8
4,385,984 - ABID97_RS21245 0.64 +1.5
4,386,010 + ABID97_RS21245 0.69 +1.0
4,386,011 - ABID97_RS21245 0.69 -0.5
4,386,261 + -0.7
4,386,262 - +0.0
4,386,483 + ABID97_RS21250 0.41 +0.7
4,386,484 - ABID97_RS21250 0.41 -0.2
4,386,484 - ABID97_RS21250 0.41 -0.3
4,386,520 - ABID97_RS21250 0.46 +0.3
4,386,666 + ABID97_RS21250 0.68 +0.5
4,386,924 + -0.3
4,386,924 + -0.5
4,386,938 + -0.8
4,386,939 - -0.5
4,387,149 - ABID97_RS21255 0.11 +1.0
4,387,151 - ABID97_RS21255 0.11 +1.1
4,387,151 - ABID97_RS21255 0.11 +0.6

Or see this region's nucleotide sequence