Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21015 and ABID97_RS21020 are separated by 104 nucleotides ABID97_RS21020 and ABID97_RS21025 are separated by 93 nucleotides ABID97_RS21025 and ABID97_RS21030 overlap by 4 nucleotides ABID97_RS21030 and ABID97_RS21035 overlap by 4 nucleotides ABID97_RS21035 and ABID97_RS21040 are separated by 21 nucleotides
ABID97_RS21015: ABID97_RS21015 - DUF808 domain-containing protein, at 4,342,071 to 4,342,979
_RS21015
ABID97_RS21020: ABID97_RS21020 - GNAT family N-acetyltransferase, at 4,343,084 to 4,343,602
_RS21020
ABID97_RS21025: ABID97_RS21025 - hypothetical protein, at 4,343,696 to 4,343,845
_RS21025
ABID97_RS21030: ABID97_RS21030 - VF530 family protein, at 4,343,842 to 4,344,138
_RS21030
ABID97_RS21035: ABID97_RS21035 - 2Fe-2S iron-sulfur cluster-binding protein, at 4,344,135 to 4,344,416
_RS21035
ABID97_RS21040: ABID97_RS21040 - MFS transporter, at 4,344,438 to 4,345,706
_RS21040
Position (kb) 4343
4344 Strain fitness (log2 ratio) -1
0
1
2 at 4343.051 kb on + strand at 4343.316 kb on - strand, within ABID97_RS21020 at 4343.316 kb on - strand, within ABID97_RS21020 at 4343.319 kb on + strand, within ABID97_RS21020 at 4343.319 kb on + strand, within ABID97_RS21020 at 4343.320 kb on - strand, within ABID97_RS21020 at 4343.320 kb on - strand, within ABID97_RS21020 at 4343.320 kb on - strand, within ABID97_RS21020 at 4343.320 kb on - strand, within ABID97_RS21020 at 4343.592 kb on + strand at 4343.592 kb on + strand at 4343.631 kb on - strand at 4343.660 kb on - strand at 4343.663 kb on + strand at 4343.664 kb on - strand at 4343.672 kb on + strand at 4343.672 kb on + strand at 4343.673 kb on - strand at 4343.673 kb on - strand at 4344.079 kb on + strand, within ABID97_RS21030 at 4344.080 kb on - strand, within ABID97_RS21030 at 4344.080 kb on - strand, within ABID97_RS21030 at 4344.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,343,051 + +0.9 4,343,316 - ABID97_RS21020 0.45 +0.8 4,343,316 - ABID97_RS21020 0.45 +1.2 4,343,319 + ABID97_RS21020 0.45 +0.1 4,343,319 + ABID97_RS21020 0.45 +0.1 4,343,320 - ABID97_RS21020 0.45 -0.2 4,343,320 - ABID97_RS21020 0.45 +0.1 4,343,320 - ABID97_RS21020 0.45 +0.6 4,343,320 - ABID97_RS21020 0.45 +0.7 4,343,592 + +2.0 4,343,592 + -0.9 4,343,631 - -0.4 4,343,660 - +0.2 4,343,663 + +2.1 4,343,664 - +0.0 4,343,672 + +0.2 4,343,672 + -0.2 4,343,673 - -0.9 4,343,673 - -0.0 4,344,079 + ABID97_RS21030 0.80 -0.0 4,344,080 - ABID97_RS21030 0.80 +0.5 4,344,080 - ABID97_RS21030 0.80 +0.2 4,344,440 - +0.0
Or see this region's nucleotide sequence