Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20745

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20740 and ABID97_RS20745 overlap by 4 nucleotidesABID97_RS20745 and ABID97_RS20750 overlap by 25 nucleotides ABID97_RS20740: ABID97_RS20740 - FUSC family membrane protein, at 4,283,025 to 4,285,268 _RS20740 ABID97_RS20745: ABID97_RS20745 - mechanosensitive ion channel domain-containing protein, at 4,285,265 to 4,286,359 _RS20745 ABID97_RS20750: ABID97_RS20750 - DUF418 domain-containing protein, at 4,286,335 to 4,287,558 _RS20750 Position (kb) 4285 4286 4287Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4284.276 kb on + strand, within ABID97_RS20740at 4284.277 kb on - strand, within ABID97_RS20740at 4284.316 kb on - strand, within ABID97_RS20740at 4284.517 kb on - strand, within ABID97_RS20740at 4284.657 kb on + strand, within ABID97_RS20740at 4284.657 kb on + strand, within ABID97_RS20740at 4284.657 kb on + strand, within ABID97_RS20740at 4284.658 kb on - strand, within ABID97_RS20740at 4284.658 kb on - strand, within ABID97_RS20740at 4286.040 kb on - strand, within ABID97_RS20745at 4286.040 kb on - strand, within ABID97_RS20745at 4286.040 kb on - strand, within ABID97_RS20745at 4286.588 kb on + strand, within ABID97_RS20750at 4286.589 kb on - strand, within ABID97_RS20750at 4286.589 kb on - strand, within ABID97_RS20750at 4287.026 kb on + strand, within ABID97_RS20750at 4287.027 kb on - strand, within ABID97_RS20750at 4287.065 kb on + strand, within ABID97_RS20750at 4287.066 kb on - strand, within ABID97_RS20750at 4287.066 kb on - strand, within ABID97_RS20750at 4287.185 kb on + strand, within ABID97_RS20750at 4287.354 kb on - strand, within ABID97_RS20750

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,284,276 + ABID97_RS20740 0.56 -3.3
4,284,277 - ABID97_RS20740 0.56 -4.7
4,284,316 - ABID97_RS20740 0.58 -1.7
4,284,517 - ABID97_RS20740 0.66 -4.8
4,284,657 + ABID97_RS20740 0.73 -2.9
4,284,657 + ABID97_RS20740 0.73 -0.5
4,284,657 + ABID97_RS20740 0.73 -2.0
4,284,658 - ABID97_RS20740 0.73 -4.0
4,284,658 - ABID97_RS20740 0.73 -3.1
4,286,040 - ABID97_RS20745 0.71 +0.1
4,286,040 - ABID97_RS20745 0.71 -0.1
4,286,040 - ABID97_RS20745 0.71 +0.8
4,286,588 + ABID97_RS20750 0.21 -1.2
4,286,589 - ABID97_RS20750 0.21 -1.3
4,286,589 - ABID97_RS20750 0.21 -0.2
4,287,026 + ABID97_RS20750 0.56 +1.3
4,287,027 - ABID97_RS20750 0.57 +0.7
4,287,065 + ABID97_RS20750 0.60 -0.2
4,287,066 - ABID97_RS20750 0.60 -0.0
4,287,066 - ABID97_RS20750 0.60 +0.1
4,287,185 + ABID97_RS20750 0.69 -0.7
4,287,354 - ABID97_RS20750 0.83 +0.7

Or see this region's nucleotide sequence