Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20360 and ABID97_RS20365 are separated by 30 nucleotides ABID97_RS20365 and ABID97_RS20370 are separated by 4 nucleotides
ABID97_RS20360: ABID97_RS20360 - carotenoid 1,2-hydratase, at 4,202,612 to 4,203,688
_RS20360
ABID97_RS20365: ABID97_RS20365 - branched-chain amino acid ABC transporter permease, at 4,203,719 to 4,204,708
_RS20365
ABID97_RS20370: ABID97_RS20370 - branched-chain amino acid ABC transporter permease, at 4,204,713 to 4,205,588
_RS20370
Position (kb) 4203
4204
4205 Strain fitness (log2 ratio) -1
0
1
2 at 4202.765 kb on + strand, within ABID97_RS20360 at 4202.765 kb on + strand, within ABID97_RS20360 at 4202.766 kb on - strand, within ABID97_RS20360 at 4202.766 kb on - strand, within ABID97_RS20360 at 4203.164 kb on + strand, within ABID97_RS20360 at 4203.171 kb on - strand, within ABID97_RS20360 at 4204.239 kb on + strand, within ABID97_RS20365 at 4204.239 kb on + strand, within ABID97_RS20365 at 4204.240 kb on - strand, within ABID97_RS20365 at 4204.240 kb on - strand, within ABID97_RS20365 at 4204.350 kb on + strand, within ABID97_RS20365 at 4204.389 kb on + strand, within ABID97_RS20365 at 4204.390 kb on - strand, within ABID97_RS20365 at 4204.390 kb on - strand, within ABID97_RS20365 at 4204.935 kb on + strand, within ABID97_RS20370 at 4205.105 kb on - strand, within ABID97_RS20370 at 4205.155 kb on + strand, within ABID97_RS20370 at 4205.215 kb on + strand, within ABID97_RS20370 at 4205.396 kb on - strand, within ABID97_RS20370 at 4205.411 kb on - strand, within ABID97_RS20370
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,202,765 + ABID97_RS20360 0.14 +0.0 4,202,765 + ABID97_RS20360 0.14 -1.2 4,202,766 - ABID97_RS20360 0.14 +0.1 4,202,766 - ABID97_RS20360 0.14 -0.6 4,203,164 + ABID97_RS20360 0.51 -0.9 4,203,171 - ABID97_RS20360 0.52 -0.6 4,204,239 + ABID97_RS20365 0.53 +0.2 4,204,239 + ABID97_RS20365 0.53 -0.2 4,204,240 - ABID97_RS20365 0.53 +0.0 4,204,240 - ABID97_RS20365 0.53 -1.1 4,204,350 + ABID97_RS20365 0.64 -0.9 4,204,389 + ABID97_RS20365 0.68 +0.3 4,204,390 - ABID97_RS20365 0.68 +2.7 4,204,390 - ABID97_RS20365 0.68 -0.9 4,204,935 + ABID97_RS20370 0.25 +0.6 4,205,105 - ABID97_RS20370 0.45 -0.0 4,205,155 + ABID97_RS20370 0.50 -0.2 4,205,215 + ABID97_RS20370 0.57 -1.1 4,205,396 - ABID97_RS20370 0.78 -1.3 4,205,411 - ABID97_RS20370 0.80 -0.0
Or see this region's nucleotide sequence