Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19930 and ABID97_RS19935 are separated by 50 nucleotides ABID97_RS19935 and ABID97_RS19940 are separated by 72 nucleotides ABID97_RS19940 and ABID97_RS19945 overlap by 4 nucleotides
ABID97_RS19930: ABID97_RS19930 - DUF2160 domain-containing protein, at 4,114,852 to 4,115,160
_RS19930
ABID97_RS19935: ABID97_RS19935 - carbohydrate ABC transporter permease, at 4,115,211 to 4,116,023
_RS19935
ABID97_RS19940: ABID97_RS19940 - sugar ABC transporter permease, at 4,116,096 to 4,116,986
_RS19940
ABID97_RS19945: ABID97_RS19945 - ABC transporter ATP-binding protein, at 4,116,983 to 4,118,053
_RS19945
Position (kb) 4116
4117 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4115.209 kb on - strand at 4115.515 kb on + strand, within ABID97_RS19935 at 4115.515 kb on + strand, within ABID97_RS19935 at 4115.756 kb on - strand, within ABID97_RS19935 at 4115.756 kb on - strand, within ABID97_RS19935 at 4115.807 kb on - strand, within ABID97_RS19935 at 4115.807 kb on - strand, within ABID97_RS19935 at 4115.950 kb on + strand at 4115.977 kb on + strand at 4116.145 kb on + strand at 4116.307 kb on + strand, within ABID97_RS19940 at 4116.378 kb on + strand, within ABID97_RS19940 at 4116.378 kb on + strand, within ABID97_RS19940 at 4116.378 kb on + strand, within ABID97_RS19940 at 4116.378 kb on + strand, within ABID97_RS19940 at 4116.548 kb on - strand, within ABID97_RS19940 at 4117.011 kb on + strand at 4117.206 kb on + strand, within ABID97_RS19945
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,115,209 - +0.0 4,115,515 + ABID97_RS19935 0.37 +0.5 4,115,515 + ABID97_RS19935 0.37 -2.9 4,115,756 - ABID97_RS19935 0.67 +0.1 4,115,756 - ABID97_RS19935 0.67 -1.3 4,115,807 - ABID97_RS19935 0.73 -1.1 4,115,807 - ABID97_RS19935 0.73 -2.3 4,115,950 + -2.8 4,115,977 + -2.0 4,116,145 + +0.5 4,116,307 + ABID97_RS19940 0.24 -4.4 4,116,378 + ABID97_RS19940 0.32 -2.7 4,116,378 + ABID97_RS19940 0.32 -2.9 4,116,378 + ABID97_RS19940 0.32 +2.1 4,116,378 + ABID97_RS19940 0.32 -0.7 4,116,548 - ABID97_RS19940 0.51 -1.8 4,117,011 + -2.9 4,117,206 + ABID97_RS19945 0.21 +0.2
Or see this region's nucleotide sequence