Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19760 and ABID97_RS19765 overlap by 8 nucleotides ABID97_RS19765 and ABID97_RS19770 overlap by 1 nucleotides ABID97_RS19770 and ABID97_RS19775 are separated by 19 nucleotides
ABID97_RS19760: ABID97_RS19760 - ROK family transcriptional regulator, at 4,081,591 to 4,082,826
_RS19760
ABID97_RS19765: ABID97_RS19765 - ATP-binding cassette domain-containing protein, at 4,082,819 to 4,083,625
_RS19765
ABID97_RS19770: ABID97_RS19770 - ABC transporter permease, at 4,083,625 to 4,084,584
_RS19770
ABID97_RS19775: ABID97_RS19775 - sugar ABC transporter substrate-binding protein, at 4,084,604 to 4,085,608
_RS19775
Position (kb)
4082
4083
4084 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4081.896 kb on - strand, within ABID97_RS19760 at 4082.077 kb on - strand, within ABID97_RS19760 at 4082.132 kb on + strand, within ABID97_RS19760 at 4082.132 kb on + strand, within ABID97_RS19760 at 4082.133 kb on - strand, within ABID97_RS19760 at 4082.133 kb on - strand, within ABID97_RS19760 at 4082.133 kb on - strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.438 kb on + strand, within ABID97_RS19760 at 4082.439 kb on - strand, within ABID97_RS19760 at 4083.932 kb on + strand, within ABID97_RS19770 at 4083.933 kb on - strand, within ABID97_RS19770 at 4083.933 kb on - strand, within ABID97_RS19770 at 4083.933 kb on - strand, within ABID97_RS19770 at 4084.004 kb on + strand, within ABID97_RS19770 at 4084.004 kb on + strand, within ABID97_RS19770 at 4084.004 kb on + strand, within ABID97_RS19770 at 4084.004 kb on + strand, within ABID97_RS19770 at 4084.005 kb on - strand, within ABID97_RS19770 at 4084.056 kb on - strand, within ABID97_RS19770 at 4084.169 kb on + strand, within ABID97_RS19770 at 4084.170 kb on - strand, within ABID97_RS19770 at 4084.170 kb on - strand, within ABID97_RS19770 at 4084.170 kb on - strand, within ABID97_RS19770 at 4084.170 kb on - strand, within ABID97_RS19770 at 4084.605 kb on + strand at 4084.605 kb on + strand at 4084.605 kb on + strand at 4084.606 kb on - strand at 4084.606 kb on - strand at 4084.606 kb on - strand at 4084.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,081,896 - ABID97_RS19760 0.25 +1.2 4,082,077 - ABID97_RS19760 0.39 -1.4 4,082,132 + ABID97_RS19760 0.44 +0.8 4,082,132 + ABID97_RS19760 0.44 -1.4 4,082,133 - ABID97_RS19760 0.44 +1.9 4,082,133 - ABID97_RS19760 0.44 -1.2 4,082,133 - ABID97_RS19760 0.44 +1.4 4,082,438 + ABID97_RS19760 0.69 -1.7 4,082,438 + ABID97_RS19760 0.69 -0.2 4,082,438 + ABID97_RS19760 0.69 -0.1 4,082,438 + ABID97_RS19760 0.69 -0.4 4,082,439 - ABID97_RS19760 0.69 -1.7 4,083,932 + ABID97_RS19770 0.32 -1.1 4,083,933 - ABID97_RS19770 0.32 +0.4 4,083,933 - ABID97_RS19770 0.32 +1.0 4,083,933 - ABID97_RS19770 0.32 +0.5 4,084,004 + ABID97_RS19770 0.39 +1.8 4,084,004 + ABID97_RS19770 0.39 +1.0 4,084,004 + ABID97_RS19770 0.39 +0.3 4,084,004 + ABID97_RS19770 0.39 +0.7 4,084,005 - ABID97_RS19770 0.40 +0.4 4,084,056 - ABID97_RS19770 0.45 +0.2 4,084,169 + ABID97_RS19770 0.57 +1.0 4,084,170 - ABID97_RS19770 0.57 -2.4 4,084,170 - ABID97_RS19770 0.57 +1.2 4,084,170 - ABID97_RS19770 0.57 +0.9 4,084,170 - ABID97_RS19770 0.57 +0.7 4,084,605 + -1.0 4,084,605 + +1.1 4,084,605 + +1.1 4,084,606 - -0.0 4,084,606 - +0.6 4,084,606 - +0.3 4,084,606 - +1.1
Or see this region's nucleotide sequence